Os01g0367700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclin-dependent protein kinase-like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0367700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Cyclin-dependent protein kinase-like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.66 | 0.192 | 13.5 | -0.614 | 0.541 | 0.635 | 0.0589 | -4.08 | 0.201 | 22.3 | 27.77 | 5640 | -- | -- |
| 19.38 | 0.205 | 13.4 | 0.36 | 0.491 | 0.333 | 0.175 | -- | 0.246 | 22.3 | 22.89 | 6878 | -- | -- |
| 16.58 | 0.19 | 13.5 | -0.676 | 0.542 | 0.693 | -- | -4.58 | 0.236 | 22.3 | 28.27 | 5577 | -- | -- |
| 18.7 | 0.201 | 13.4 | 0.305 | 0.538 | 0.306 | -- | -- | 0.26 | 22.5 | 20.4 | 7815 | -- | -- |
| 33.14 | 0.268 | 13.4 | -0.613 | -- | 0.889 | -- | -5.26 | 0.25 | -- | 27.48 | 3748 | -- | -- |
| 21.52 | 0.217 | 13.3 | 0.477 | 0.53 | -- | 0.117 | -- | 0.377 | 22.4 | -- | -- | -- | -- |
| 21.57 | 0.217 | 13.3 | 0.472 | 0.53 | -- | -- | -- | 0.376 | 22.4 | -- | -- | -- | -- |
| 34.34 | 0.273 | 13.3 | 0.296 | -- | 0.371 | -- | -- | 0.266 | -- | 20.8 | 3703 | -- | -- |
| 19.88 | 0.208 | 13.4 | -- | 0.505 | 0.517 | -- | -- | 0.188 | 22.4 | 16.2 | 7952 | -- | -- |
| 38.73 | 0.291 | 13.3 | 0.481 | -- | -- | -- | -- | 0.378 | -- | -- | -- | -- | -- |
| 27.45 | 0.245 | 13.3 | -- | 0.533 | -- | -- | -- | 0.324 | 22.5 | -- | -- | -- | -- |
| 31.24 | 0.26 | 13.4 | -- | -- | 0.777 | -- | -- | 0.214 | -- | 17.2 | 801 | -- | -- |
| 44.83 | 0.313 | 13.3 | -- | -- | -- | -- | -- | 0.325 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.85 | radiation | 20 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 2 | 16.85 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 5 | 16.95 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 18 |
| 35 | 16.98 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 36 | 16.98 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 54 | 16.99 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 88 | 17.03 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 14 |
| 90 | 17.03 | radiation | 20 | 43200 | > th | dose dependent | rect. | 16 | 18 |
| 91 | 17.04 | radiation | 30 | 43200 | < th | dose independent | sin | 10 | NA |
| 127 | 17.05 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 143 | 17.06 | radiation | 30 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 151 | 17.07 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 185 | 17.08 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 203 | 17.10 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 213 | 17.11 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 234 | 17.12 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 5 |
| 235 | 17.12 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 254 | 17.13 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 422 | 17.16 | radiation | 20 | 43200 | > th | dose dependent | sin | 11 | NA |
| 486 | 17.20 | radiation | 30 | 43200 | < th | dose independent | no | NA | NA |
| 488 | 17.20 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 497 | 17.20 | radiation | 30 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 636 | 17.21 | radiation | 30 | 43200 | < th | dose independent | sin | 23 | NA |
| 720 | 17.21 | radiation | 40 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 738 | 17.22 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 740 | 17.22 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 886 | 17.24 | humidity | 60 | 43200 | < th | dose independent | rect. | 11 | 1 |