FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0364900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0182) R2 : 0.0106
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0847 (0.0384) R2dN8 : 0.0137 R2N8 : 0.0106
σ : 0.343
deviance : 54.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.13 0.329 2.89 0.0706 0.0259 1.58 -0.253 3.22 0.102 3 17.97 762 -- --
52.72 0.338 2.87 0.133 0.0134 0.182 0.49 -- 0.125 14.5 21.6 2258 -- --
48.56 0.325 2.9 0.0946 0.0285 3.18 -- 6.57 0.101 7.56 16.46 566 -- --
53.43 0.34 2.87 0.11 0.0207 0.302 -- -- 0.109 5.75 17.57 734 -- --
48.58 0.325 2.9 0.0953 -- 3.21 -- 6.61 0.0993 -- 16.48 566 -- --
53.05 0.341 2.87 0.0557 0.0321 -- 0.447 -- 0.0907 13.2 -- -- -- --
53.83 0.344 2.87 0.0708 0.044 -- -- -- 0.0925 10 -- -- -- --
53.31 0.34 2.87 0.128 -- 0.302 -- -- 0.112 -- 19.49 785 -- --
53.66 0.341 2.87 -- 0.0204 0.24 -- -- 0.0943 5.67 18.79 764 -- --
53.94 0.343 2.87 0.0702 -- -- -- -- 0.0925 -- -- -- -- --
53.96 0.344 2.87 -- 0.0437 -- -- -- 0.0847 9.9 -- -- -- --
53.68 0.341 2.87 -- -- 0.234 -- -- 0.0946 -- 18.85 763 -- --
54.07 0.343 2.87 -- -- -- -- -- 0.0847 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.46 wind 9.0 4320 < th dose independent rect. 3 1
3 47.31 temperature 10.0 1440 > th dose independent rect. 3 1
6 47.31 temperature 30.0 1440 < th dose independent rect. 3 1
10 47.31 humidity 50.0 1440 > th dose independent rect. 3 1
19 47.31 atmosphere 995.0 1440 > th dose independent rect. 3 1
20 47.31 radiation 1.0 1440 < th dose independent rect. 3 1
40 47.31 temperature 10.0 1440 > th dose independent rect. 4 23
43 47.31 radiation 1.0 1440 < th dose dependent rect. 3 1
56 47.33 temperature 20.0 30 > th dose dependent rect. 2 1
61 47.35 temperature 25.0 90 > th dose independent rect. 2 1
62 47.36 atmosphere 1005.0 30 > th dose dependent rect. 2 1
65 47.37 wind 3.0 30 < th dose dependent rect. 2 1
68 47.38 atmosphere 1005.0 30 > th dose independent rect. 2 1
72 47.39 wind 3.0 30 < th dose independent rect. 2 1
76 47.40 humidity 80.0 30 > th dose independent rect. 2 1
78 47.40 atmosphere 1000.0 30 > th dose independent rect. 3 23
84 47.41 temperature 10.0 30 > th dose independent rect. 2 1
86 47.41 temperature 30.0 30 < th dose independent rect. 2 1
87 47.41 humidity 50.0 30 > th dose independent rect. 2 1
91 47.41 atmosphere 995.0 30 > th dose independent rect. 2 1
93 47.41 atmosphere 1010.0 30 < th dose independent rect. 2 1
95 47.41 radiation 1.0 30 < th dose independent rect. 2 1
100 47.41 precipitation 0.1 30 < th dose independent rect. 2 1
101 47.41 temperature 10.0 30 > th dose independent rect. 3 23
102 47.41 humidity 50.0 30 > th dose dependent rect. 2 1
106 47.41 radiation 1.0 30 < th dose dependent rect. 2 1
111 47.41 precipitation 0.1 30 < th dose dependent rect. 2 1
116 47.46 atmosphere 1015.0 30 < th dose dependent rect. 2 1
117 47.47 precipitation 0.1 30 < th dose independent rect. 3 23
119 47.47 precipitation 0.1 30 < th dose dependent rect. 3 23
124 47.52 temperature 30.0 30 < th dose dependent rect. 2 1
126 47.56 wind 1.0 30 > th dose independent rect. 2 1
180 47.95 wind 9.0 30 < th dose independent rect. 3 23
186 48.28 temperature 20.0 1440 < th dose dependent rect. 12 1
187 48.29 temperature 20.0 1440 < th dose independent rect. 12 2
191 48.31 wind 9.0 4320 > th dose independent rect. 3 1
224 48.31 wind 9.0 4320 > th dose dependent rect. 3 1
261 48.44 temperature 20.0 1440 < th dose independent rect. 12 6
265 48.50 temperature 20.0 1440 < th dose independent rect. 17 1
269 48.52 temperature 20.0 1440 > th dose independent rect. 17 1
271 48.52 humidity 50.0 30 > th dose independent rect. 3 23
275 48.55 temperature 20.0 1440 > th dose independent rect. 12 6
282 48.58 humidity 90.0 1440 > th dose independent rect. 12 1
286 48.60 humidity 90.0 1440 > th dose dependent rect. 12 1
290 48.65 temperature 20.0 1440 > th dose independent rect. 12 3
309 48.79 temperature 20.0 1440 < th dose dependent rect. 19 1
310 48.81 temperature 20.0 720 < th dose dependent rect. 7 1
315 48.88 humidity 90.0 1440 < th dose independent rect. 12 1
316 48.88 wind 1.0 270 < th dose dependent rect. 7 3
318 48.93 wind 1.0 720 < th dose dependent rect. 7 1
324 48.95 temperature 20.0 1440 < th dose dependent rect. 17 1
326 48.96 temperature 20.0 720 > th dose independent rect. 7 8
327 48.96 temperature 20.0 1440 < th dose dependent rect. 12 8
328 48.97 temperature 20.0 720 < th dose dependent rect. 7 5
330 48.98 temperature 20.0 1440 < th dose dependent rect. 17 3
412 49.34 temperature 30.0 30 < th dose independent rect. 3 23
413 49.35 wind 1.0 720 < th dose independent rect. 7 1
427 49.45 humidity 90.0 90 < th dose independent rect. 2 1
438 49.54 temperature 20.0 1440 < th dose dependent rect. 7 16
441 49.58 wind 1.0 720 < th dose independent rect. 7 3
442 49.58 wind 9.0 4320 < th dose independent rect. 3 4
465 49.64 wind 1.0 4320 > th dose independent rect. 15 1
489 49.72 temperature 20.0 720 < th dose independent rect. 7 1
510 49.76 temperature 20.0 720 < th dose independent rect. 7 5
527 49.80 wind 5.0 4320 < th dose independent rect. 4 1
538 49.81 temperature 20.0 1440 < th dose dependent rect. 22 1
552 49.84 wind 5.0 4320 > th dose independent rect. 3 3
556 49.85 wind 5.0 4320 < th dose independent rect. 2 4
568 49.89 temperature 20.0 1440 < th dose dependent sin 20 NA
583 49.93 radiation 30.0 90 > th dose independent rect. 11 1
587 49.93 temperature 20.0 720 < th dose dependent rect. 24 1
589 49.94 wind 1.0 4320 < th dose independent rect. 15 1
618 50.00 wind 5.0 4320 > th dose dependent rect. 1 7
625 50.01 wind 3.0 10 < th dose dependent rect. 11 2
636 50.03 atmosphere 1015.0 30 < th dose independent rect. 3 23
650 50.06 wind 9.0 4320 < th dose independent rect. 7 1
657 50.07 wind 9.0 4320 < th dose independent rect. 5 5
709 50.11 wind 9.0 4320 < th dose independent rect. 24 9
719 50.12 humidity 90.0 4320 > th dose dependent rect. 14 3
721 50.12 wind 9.0 4320 > th dose dependent rect. 22 6
741 50.14 wind 1.0 4320 < th dose dependent rect. 15 1
757 50.15 wind 9.0 4320 > th dose independent rect. 21 8
829 50.18 wind 7.0 4320 < th dose independent rect. 22 10
845 50.19 wind 7.0 4320 < th dose independent rect. 22 8
873 50.20 humidity 90.0 4320 > th dose independent rect. 15 2
927 50.21 humidity 90.0 4320 > th dose dependent rect. 11 6