Os01g0363600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0363600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.95 | 0.393 | 8.72 | -0.003 | 2.39 | -0.793 | 0.115 | -1.47 | -0.486 | 4.01 | 29.69 | 78 | -- | -- |
| 76.54 | 0.407 | 8.75 | 0.0271 | 2.43 | -0.871 | -0.575 | -- | -0.505 | 3.94 | 32.15 | 79 | -- | -- |
| 69.98 | 0.39 | 8.72 | -0.0033 | 2.38 | -0.794 | -- | -1.42 | -0.487 | 4.01 | 29.85 | 78 | -- | -- |
| 78.1 | 0.412 | 8.73 | 0.0309 | 2.38 | -0.829 | -- | -- | -0.492 | 4 | 31.84 | 78 | -- | -- |
| 127.51 | 0.526 | 8.68 | -0.176 | -- | 1.78 | -- | -3.73 | -0.421 | -- | 1.482 | 567 | -- | -- |
| 89.34 | 0.443 | 8.71 | 0.0705 | 2.01 | -- | -0.345 | -- | -0.441 | 4.98 | -- | -- | -- | -- |
| 89.62 | 0.443 | 8.7 | 0.0716 | 2.01 | -- | -- | -- | -0.439 | 5.02 | -- | -- | -- | -- |
| 86.41 | 0.433 | 8.71 | 0.283 | -- | 2.22 | -- | -- | -0.351 | -- | 1.073e-07 | 626 | -- | -- |
| 78.13 | 0.412 | 8.73 | -- | 2.38 | -0.831 | -- | -- | -0.496 | 4 | 31.82 | 78 | -- | -- |
| 302.41 | 0.813 | 8.73 | 0.144 | -- | -- | -- | -- | -0.388 | -- | -- | -- | -- | -- |
| 89.75 | 0.443 | 8.71 | -- | 2.01 | -- | -- | -- | -0.447 | 5.02 | -- | -- | -- | -- |
| 88.77 | 0.439 | 8.72 | -- | -- | 2.21 | -- | -- | -0.375 | -- | 0.06 | 628 | -- | -- |
| 302.96 | 0.812 | 8.73 | -- | -- | -- | -- | -- | -0.404 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.93 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 2 | 66.26 | radiation | 20 | 720 | < th | dose independent | rect. | 21 | 16 |
| 4 | 66.77 | radiation | 20 | 720 | < th | dose independent | rect. | 5 | 8 |
| 10 | 67.08 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 5 |
| 12 | 67.16 | radiation | 20 | 720 | < th | dose independent | rect. | 3 | 10 |
| 18 | 67.35 | radiation | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 29 | 67.69 | radiation | 40 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 38 | 67.87 | radiation | 40 | 720 | < th | dose dependent | rect. | 5 | 8 |
| 94 | 68.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 116 | 69.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 118 | 69.07 | radiation | 40 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 166 | 69.38 | radiation | 40 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 173 | 69.45 | radiation | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 178 | 69.49 | radiation | 40 | 720 | < th | dose dependent | sin | 6 | NA |
| 206 | 69.70 | radiation | 30 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 217 | 69.79 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 220 | 69.80 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 245 | 69.95 | radiation | 10 | 90 | > th | dose independent | sin | 23 | NA |
| 270 | 70.03 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 22 |
| 295 | 70.19 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 313 | 70.27 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 315 | 70.28 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 335 | 70.35 | radiation | 1 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 350 | 70.37 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 420 | 70.47 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 424 | 70.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 425 | 70.49 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 8 |
| 446 | 70.52 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 472 | 70.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 500 | 70.62 | radiation | 40 | 10 | < th | dose dependent | sin | 18 | NA |
| 507 | 70.63 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 514 | 70.65 | radiation | 40 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 515 | 70.65 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 530 | 70.66 | radiation | 20 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 535 | 70.67 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 540 | 70.69 | temperature | 20 | 30 | > th | dose dependent | sin | 1 | NA |
| 553 | 70.72 | radiation | 1 | 90 | > th | dose dependent | sin | 0 | NA |
| 554 | 70.72 | radiation | 20 | 10 | < th | dose dependent | sin | 19 | NA |
| 568 | 70.75 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 573 | 70.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 596 | 70.81 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 599 | 70.82 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 654 | 70.94 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 662 | 70.96 | radiation | 10 | 90 | > th | dose independent | rect. | 7 | 10 |
| 669 | 70.97 | radiation | 40 | 10 | < th | dose dependent | no | NA | NA |
| 683 | 71.01 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 693 | 71.03 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 724 | 71.08 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 735 | 71.11 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 858 | 71.29 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 861 | 71.30 | radiation | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 872 | 71.32 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 878 | 71.32 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 962 | 71.35 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |