Os01g0363300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF588 family protein.
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Os01g0363300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF588 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.43 | 0.494 | 9.69 | 0.647 | 1.27 | -1.09 | -0.0255 | 1 | 0.698 | 5.32 | 12.59 | 282 | -- | -- |
| 113.01 | 0.495 | 9.71 | 0.624 | 1.28 | -1.05 | -0.403 | -- | 0.678 | 5.02 | 13.74 | 300 | -- | -- |
| 110.44 | 0.489 | 9.69 | 0.647 | 1.27 | -1.09 | -- | 1.01 | 0.698 | 5.32 | 12.6 | 282 | -- | -- |
| 113.31 | 0.496 | 9.71 | 0.59 | 1.25 | -1.07 | -- | -- | 0.707 | 4.86 | 13.76 | 342 | -- | -- |
| 156.02 | 0.582 | 9.7 | 1.29 | -- | -1.57 | -- | 2.17 | 0.985 | -- | 10.17 | 433 | -- | -- |
| 135.28 | 0.545 | 9.73 | 0.466 | 2.05 | -- | -0.561 | -- | 0.554 | 4.17 | -- | -- | -- | -- |
| 136.16 | 0.546 | 9.73 | 0.472 | 2.05 | -- | -- | -- | 0.557 | 4.18 | -- | -- | -- | -- |
| 127.99 | 0.527 | 9.71 | 0.71 | -- | -2.14 | -- | -- | 0.894 | -- | 10 | 469 | -- | -- |
| 121.98 | 0.514 | 9.72 | -- | 1.34 | -1.04 | -- | -- | 0.61 | 4.7 | 17.45 | 341 | -- | -- |
| 362.67 | 0.89 | 9.74 | 0.555 | -- | -- | -- | -- | 0.611 | -- | -- | -- | -- | -- |
| 142.04 | 0.558 | 9.74 | -- | 2.05 | -- | -- | -- | 0.504 | 4.18 | -- | -- | -- | -- |
| 131.91 | 0.535 | 9.74 | -- | -- | -2.19 | -- | -- | 0.602 | -- | 6.283 | 523 | -- | -- |
| 370.78 | 0.899 | 9.75 | -- | -- | -- | -- | -- | 0.55 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.73 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 10 | 6 |
| 3 | 101.29 | radiation | 40.0 | 270 | > th | dose independent | rect. | 12 | 22 |
| 4 | 101.37 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 12 | 3 |
| 5 | 101.56 | radiation | 10.0 | 90 | < th | dose dependent | sin | 17 | NA |
| 6 | 101.57 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 9 | 101.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 8 |
| 11 | 101.92 | humidity | 80.0 | 30 | < th | dose independent | rect. | 12 | 6 |
| 12 | 102.00 | radiation | 40.0 | 270 | > th | dose independent | sin | 13 | NA |
| 13 | 102.00 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 12 | 6 |
| 14 | 102.04 | temperature | 25.0 | 30 | > th | dose independent | rect. | 12 | 6 |
| 17 | 102.11 | radiation | 40.0 | 270 | < th | dose dependent | sin | 20 | NA |
| 27 | 102.33 | radiation | 40.0 | 270 | > th | dose independent | sin | 15 | NA |
| 30 | 102.36 | radiation | 1.0 | 270 | > th | dose dependent | sin | 19 | NA |
| 33 | 102.38 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 12 | 3 |
| 35 | 102.43 | radiation | 40.0 | 270 | > th | dose independent | rect. | 12 | 4 |
| 56 | 102.47 | radiation | 20.0 | 270 | < th | dose dependent | sin | 21 | NA |
| 62 | 102.60 | radiation | 10.0 | 270 | > th | dose independent | sin | 20 | NA |
| 64 | 102.64 | temperature | 25.0 | 270 | > th | dose independent | rect. | 12 | 3 |
| 66 | 102.65 | humidity | 80.0 | 270 | < th | dose independent | rect. | 12 | 3 |
| 71 | 102.71 | radiation | 1.0 | 90 | > th | dose independent | sin | 18 | NA |
| 89 | 102.86 | radiation | 10.0 | 270 | > th | dose independent | rect. | 12 | 3 |
| 91 | 102.88 | temperature | 25.0 | 270 | > th | dose independent | rect. | 11 | 5 |
| 94 | 102.93 | radiation | 1.0 | 90 | < th | dose independent | sin | 18 | NA |
| 97 | 102.99 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 11 | 21 |
| 106 | 103.27 | radiation | 10.0 | 270 | > th | dose independent | rect. | 10 | 22 |
| 114 | 103.41 | radiation | 40.0 | 270 | < th | dose independent | sin | 15 | NA |
| 151 | 103.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 155 | 103.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 158 | 103.77 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 179 | 103.85 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 7 |
| 272 | 104.22 | radiation | 30.0 | 270 | > th | dose dependent | sin | 15 | NA |
| 311 | 104.40 | radiation | 1.0 | 90 | > th | dose dependent | sin | 15 | NA |
| 323 | 104.56 | wind | 1.0 | 30 | > th | dose independent | rect. | 18 | 18 |
| 360 | 104.94 | temperature | 15.0 | 30 | > th | dose independent | rect. | 18 | 18 |
| 362 | 104.97 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 12 | 3 |
| 368 | 105.02 | humidity | 80.0 | 270 | < th | dose independent | rect. | 10 | 7 |
| 371 | 105.04 | wind | 3.0 | 30 | > th | dose independent | rect. | 12 | 6 |
| 423 | 105.29 | temperature | 30.0 | 10 | < th | dose independent | rect. | 18 | 20 |
| 473 | 105.57 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 10 | 6 |
| 474 | 105.60 | wind | 1.0 | 90 | > th | dose dependent | rect. | 12 | 6 |
| 535 | 105.89 | radiation | 20.0 | 270 | < th | dose independent | rect. | 6 | 15 |
| 536 | 105.91 | wind | 9.0 | 30 | < th | dose independent | rect. | 12 | 6 |
| 553 | 106.10 | humidity | 50.0 | 30 | > th | dose independent | rect. | 18 | 18 |
| 559 | 106.16 | radiation | 40.0 | 270 | < th | dose independent | rect. | 6 | 15 |
| 562 | 106.19 | temperature | 30.0 | 30 | < th | dose independent | rect. | 18 | 18 |
| 566 | 106.22 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 18 | 18 |
| 581 | 106.26 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 6 |
| 583 | 106.26 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 12 | 6 |
| 599 | 106.46 | wind | 9.0 | 30 | < th | dose independent | rect. | 18 | 18 |
| 643 | 106.72 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 22 |
| 645 | 106.74 | radiation | 40.0 | 90 | < th | dose independent | rect. | 18 | 20 |
| 672 | 106.96 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 6 |
| 673 | 106.96 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 6 |
| 685 | 107.06 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 18 | 18 |
| 686 | 107.06 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 18 | 18 |
| 709 | 107.16 | humidity | 70.0 | 270 | > th | dose independent | rect. | 6 | 14 |
| 742 | 107.23 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 18 | 18 |
| 746 | 107.29 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 21 |
| 931 | 108.05 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 1 | 17 |