FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0363000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0164) R2 : 0.00325
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.042 (0.0345) R2dN8 : 0.0042 R2N8 : 0.00325
σ : 0.308
deviance : 43.59
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.35 0.302 2.94 0.146 0.267 -0.239 -0.662 0.847 0.0788 11.3 0.19 117 -- --
41.98 0.302 2.94 0.0872 0.275 -0.256 0.237 -- 0.0912 11.7 0.1823 117 -- --
41.99 0.304 2.94 0.0997 0.21 -0.163 -- 0.267 0.0509 10.1 0.1399 144 -- --
42.24 0.303 2.94 0.0885 0.29 -0.264 -- -- 0.0745 11.8 0.1365 119 -- --
42.56 0.304 2.95 0.076 -- -0.0512 -- 0.318 0.0508 -- 0.17 229 -- --
42.8 0.307 2.95 0.0784 0.0721 -- -0.332 -- 0.0478 3.92 -- -- -- --
43.04 0.307 2.95 0.0831 0.0821 -- -- -- 0.0496 5.68 -- -- -- --
42.94 0.305 2.95 0.0984 -- -0.0981 -- -- 0.0407 -- 0.07958 637 -- --
42.53 0.304 2.95 -- 0.273 -0.249 -- -- 0.0715 11.6 0.14 118 -- --
43.39 0.308 2.95 0.0857 -- -- -- -- 0.0515 -- -- -- -- --
43.22 0.308 2.95 -- 0.0834 -- -- -- 0.0403 5.64 -- -- -- --
43.13 0.306 2.95 -- -- -0.0946 -- -- 0.0422 -- 0.1804 641 -- --
43.59 0.308 2.95 -- -- -- -- -- 0.042 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.83 humidity 90.0 10 < th dose independent rect. 4 1
3 37.84 atmosphere 1005.0 10 > th dose dependent rect. 4 1
6 37.88 wind 5.0 30 < th dose independent rect. 4 1
10 37.89 atmosphere 1005.0 30 > th dose independent rect. 4 1
11 37.89 wind 9.0 30 < th dose dependent rect. 4 1
13 37.90 temperature 10.0 30 > th dose independent rect. 4 1
15 37.90 temperature 30.0 30 < th dose independent rect. 4 1
16 37.90 humidity 50.0 30 > th dose independent rect. 4 1
20 37.90 atmosphere 995.0 30 > th dose independent rect. 4 1
22 37.90 atmosphere 1010.0 30 < th dose independent rect. 4 1
24 37.90 radiation 1.0 30 < th dose independent rect. 4 1
29 37.90 precipitation 0.1 30 < th dose independent rect. 4 1
30 37.90 temperature 25.0 90 > th dose independent rect. 2 3
31 37.90 temperature 10.0 30 > th dose independent rect. 5 23
32 37.90 wind 5.0 30 < th dose dependent rect. 4 1
34 37.90 temperature 30.0 30 < th dose dependent rect. 4 1
36 37.90 radiation 1.0 30 < th dose dependent rect. 4 1
41 37.90 precipitation 0.1 30 < th dose dependent rect. 4 1
42 37.91 temperature 10.0 30 > th dose dependent rect. 4 1
43 37.91 humidity 50.0 30 > th dose dependent rect. 4 1
47 37.93 wind 1.0 30 > th dose independent rect. 4 1
48 37.93 wind 7.0 1440 < th dose independent rect. 5 1
50 37.93 temperature 10.0 1440 > th dose independent rect. 5 1
53 37.93 temperature 30.0 1440 < th dose independent rect. 5 1
57 37.93 humidity 50.0 1440 > th dose independent rect. 5 1
67 37.93 atmosphere 995.0 1440 > th dose independent rect. 5 1
68 37.93 atmosphere 1015.0 1440 < th dose independent rect. 5 1
69 37.93 radiation 20.0 1440 < th dose independent rect. 5 1
78 37.93 temperature 10.0 1440 > th dose independent rect. 6 23
82 37.93 atmosphere 1015.0 30 < th dose dependent rect. 4 1
98 37.99 humidity 90.0 90 < th dose dependent rect. 4 1
146 38.11 wind 1.0 30 > th dose dependent rect. 4 1
151 38.14 humidity 90.0 10 < th dose dependent rect. 4 1
160 38.24 atmosphere 995.0 30 > th dose independent rect. 5 23
161 38.25 wind 9.0 30 < th dose independent rect. 5 23
166 38.34 precipitation 0.1 30 < th dose independent rect. 5 23
168 38.34 precipitation 0.1 30 < th dose dependent rect. 5 23
197 39.21 temperature 25.0 10 > th dose independent rect. 22 8
245 40.20 temperature 30.0 30 < th dose independent rect. 5 23
255 40.37 humidity 50.0 30 > th dose independent rect. 5 23
271 40.47 atmosphere 1005.0 270 > th dose dependent rect. 1 1
298 40.53 temperature 20.0 30 > th dose dependent rect. 22 7
308 40.58 radiation 1.0 10 < th dose dependent rect. 4 8
312 40.60 radiation 1.0 10 < th dose dependent rect. 4 4
319 40.63 radiation 10.0 4320 < th dose dependent rect. 23 1
326 40.68 radiation 1.0 10 < th dose independent rect. 4 8
330 40.70 radiation 1.0 10 < th dose independent rect. 4 4
382 40.88 humidity 80.0 30 > th dose independent rect. 22 1
388 40.90 wind 3.0 30 < th dose independent rect. 22 1
389 40.90 wind 5.0 30 < th dose dependent rect. 22 1
391 40.90 humidity 60.0 30 > th dose dependent rect. 22 1
396 40.91 temperature 10.0 30 > th dose dependent rect. 22 1
398 40.91 atmosphere 995.0 30 > th dose dependent rect. 22 1
404 40.92 temperature 10.0 30 > th dose independent rect. 22 1
408 40.92 temperature 30.0 30 < th dose independent rect. 22 1
409 40.92 humidity 50.0 30 > th dose independent rect. 22 1
412 40.92 atmosphere 995.0 30 > th dose independent rect. 22 1
414 40.92 atmosphere 1010.0 30 < th dose independent rect. 22 1
416 40.92 radiation 1.0 30 < th dose independent rect. 22 1
421 40.92 precipitation 0.1 30 < th dose independent rect. 22 1
422 40.92 temperature 10.0 30 > th dose independent rect. 23 23
428 40.92 radiation 1.0 30 < th dose dependent rect. 22 1
434 40.92 precipitation 0.1 30 < th dose dependent rect. 22 1
435 40.93 wind 1.0 30 > th dose independent rect. 22 1
436 40.93 wind 9.0 1440 < th dose independent rect. 23 1
437 40.93 temperature 10.0 1440 > th dose independent rect. 23 1
440 40.93 temperature 30.0 1440 < th dose independent rect. 23 1
444 40.93 humidity 50.0 1440 > th dose independent rect. 23 1
455 40.93 atmosphere 995.0 1440 > th dose independent rect. 23 1
456 40.93 radiation 1.0 1440 < th dose independent rect. 23 1
480 40.93 temperature 10.0 1440 > th dose independent rect. 24 23
495 40.95 atmosphere 1015.0 30 < th dose dependent rect. 22 1
499 40.96 humidity 90.0 30 < th dose independent rect. 22 1
517 41.00 temperature 30.0 30 < th dose dependent rect. 22 1
525 41.02 wind 9.0 30 < th dose independent rect. 23 23
526 41.02 wind 1.0 30 > th dose dependent rect. 22 1
533 41.03 temperature 10.0 90 > th dose dependent rect. 19 10
534 41.03 temperature 10.0 90 > th dose dependent rect. 5 14
539 41.05 humidity 90.0 270 < th dose independent rect. 1 1
542 41.06 humidity 90.0 30 < th dose dependent rect. 22 1
547 41.07 wind 1.0 90 > th dose independent rect. 19 10
611 41.16 temperature 25.0 1440 < th dose independent rect. 1 4
625 41.18 atmosphere 1000.0 90 > th dose independent rect. 5 14
648 41.20 temperature 10.0 30 > th dose dependent rect. 5 23
673 41.22 wind 9.0 90 < th dose independent rect. 5 14
674 41.22 wind 1.0 30 > th dose independent rect. 5 23
676 41.23 temperature 25.0 1440 < th dose independent rect. 1 1
683 41.23 temperature 25.0 720 > th dose dependent rect. 5 3
698 41.26 temperature 25.0 720 > th dose independent rect. 5 3
699 41.26 temperature 25.0 720 < th dose independent rect. 21 5
723 41.28 radiation 1.0 90 < th dose dependent rect. 19 22
724 41.28 radiation 1.0 90 < th dose dependent rect. 1 23
738 41.30 wind 7.0 90 < th dose independent rect. 19 10
739 41.30 temperature 25.0 720 > th dose dependent rect. 22 1
747 41.31 temperature 30.0 720 < th dose independent rect. 17 12
756 41.32 precipitation 0.1 90 < th dose independent rect. 19 10
757 41.32 temperature 15.0 90 > th dose independent rect. 5 14
764 41.32 precipitation 0.1 90 < th dose dependent rect. 19 10
793 41.33 precipitation 0.1 720 < th dose independent rect. 5 12
795 41.33 radiation 1.0 90 < th dose independent rect. 19 22
796 41.33 temperature 10.0 30 > th dose independent rect. 3 23
798 41.33 humidity 50.0 30 > th dose dependent rect. 2 1
811 41.33 precipitation 0.1 720 < th dose dependent rect. 5 12
816 41.34 temperature 10.0 90 > th dose independent rect. 19 10
818 41.34 temperature 30.0 90 < th dose independent rect. 19 10
819 41.34 humidity 50.0 90 > th dose independent rect. 19 10
821 41.34 atmosphere 995.0 90 > th dose independent rect. 19 10
822 41.34 radiation 20.0 90 < th dose independent rect. 19 10
826 41.34 atmosphere 1015.0 90 < th dose independent rect. 5 14
832 41.34 atmosphere 1015.0 30 < th dose dependent rect. 2 1
837 41.34 atmosphere 995.0 90 > th dose dependent rect. 19 10
850 41.35 precipitation 0.1 90 < th dose independent rect. 5 14
851 41.35 precipitation 0.1 720 < th dose independent rect. 23 18
853 41.35 atmosphere 1015.0 30 < th dose independent rect. 5 23
854 41.35 temperature 30.0 30 < th dose dependent rect. 2 1
856 41.35 radiation 20.0 90 < th dose dependent rect. 19 10
859 41.35 precipitation 0.1 90 < th dose dependent rect. 5 14
860 41.35 precipitation 0.1 720 < th dose dependent rect. 23 18
870 41.36 radiation 1.0 90 < th dose independent rect. 19 10
890 41.37 radiation 1.0 90 < th dose dependent rect. 7 22
895 41.38 wind 9.0 720 < th dose independent rect. 17 12
896 41.38 radiation 1.0 90 < th dose independent rect. 7 22
903 41.38 radiation 1.0 90 < th dose dependent rect. 9 20
904 41.38 radiation 1.0 90 < th dose dependent rect. 19 20
912 41.39 radiation 1.0 90 < th dose independent rect. 1 23
918 41.39 radiation 1.0 90 < th dose dependent rect. 13 16
920 41.39 radiation 1.0 90 < th dose dependent rect. 19 18
930 41.40 radiation 1.0 90 < th dose independent rect. 9 20
932 41.40 radiation 1.0 10 < th dose independent rect. 19 23
942 41.41 radiation 10.0 720 < th dose independent rect. 17 12
943 41.41 radiation 1.0 90 < th dose independent rect. 13 16
947 41.41 temperature 25.0 720 > th dose dependent rect. 18 5
949 41.41 temperature 25.0 720 > th dose dependent rect. 18 8
951 41.41 radiation 1.0 90 < th dose dependent rect. 19 12
972 41.42 radiation 1.0 90 < th dose dependent rect. 15 14
987 41.43 wind 9.0 90 < th dose dependent rect. 19 10
999 41.44 radiation 1.0 90 < th dose independent rect. 15 14