FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0361700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.049) R2 : 0.191
β1 : -0.881 (0.18) R2dD : 0.0449 R2D : 0.0177
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.56 (0.277) R2dE : 0.152 R2E : 0.141
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.239 (0.105) R2dN8 : 0.0123 R2N8 : 0.0101
σ : 0.917
deviance : 387.48
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 1.5
memory length : 79
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.9
open length of G : 1.23

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
384.47 0.921 3.41 -1.19 0.241 2.61 -0.79 -6.01 -0.236 1.2 0.9676 114 4.03 0.998
390.28 0.92 3.37 -0.89 0.298 2.12 -0.674 -- -0.223 1.55 0.8025 169 4.12 1.05
386.8 0.916 3.41 -1.16 0.242 2.6 -- -6.23 -0.23 1.2 0.9202 114 4.06 1.02
389.86 0.92 3.4 -0.91 0.233 2.62 -- -- -0.26 1.06 1.2 72 4.06 1.1
390.33 0.92 3.41 -1.16 -- 2.67 -- -6.27 -0.22 -- 0.9273 140 4.07 1.03
442.36 0.986 3.4 -0.776 0.549 -- -0.235 -- -0.344 3.7 -- -- -- --
442.5 0.985 3.4 -0.772 0.55 -- -- -- -0.343 3.84 -- -- -- --
387.48 0.917 3.37 -0.881 -- 2.56 -- -- -0.239 -- 1.5 79 3.9 1.23
405.94 0.938 3.36 -- 0.197 2.46 -- -- -0.15 1.16 1.312 72 3.89 1.28
459.14 1 3.4 -0.749 -- -- -- -- -0.328 -- -- -- -- --
458.2 1 3.38 -- 0.535 -- -- -- -0.257 3.86 -- -- -- --
407.6 0.94 3.36 -- -- 2.5 -- -- -0.144 -- 1.473 76 3.86 1.3
473.95 1.02 3.38 -- -- -- -- -- -0.245 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 385.67 wind 1.0 90 < th dose independent rect. 4 1
2 386.18 humidity 50.0 1440 > th dose independent rect. 16 1
3 387.59 wind 1.0 90 < th dose dependent rect. 4 1
4 389.26 temperature 30.0 720 > th dose dependent rect. 18 1
18 389.47 wind 3.0 10 < th dose dependent rect. 3 3
38 392.13 humidity 50.0 1440 < th dose independent rect. 16 1
39 392.29 humidity 50.0 1440 < th dose dependent rect. 16 1
42 393.53 temperature 20.0 90 > th dose dependent rect. 4 1
43 394.58 temperature 20.0 90 > th dose independent rect. 4 1
47 395.14 wind 3.0 10 < th dose dependent rect. 3 6
50 395.35 humidity 90.0 90 > th dose independent rect. 4 1
56 395.83 temperature 20.0 90 > th dose dependent rect. 3 3
57 395.88 humidity 70.0 720 < th dose independent rect. 18 2
69 396.01 temperature 25.0 90 < th dose independent rect. 4 1
82 396.76 temperature 30.0 720 > th dose independent rect. 18 1
96 396.77 atmosphere 1005.0 90 > th dose independent rect. 3 3
97 396.90 humidity 70.0 720 > th dose independent rect. 18 7
98 397.07 atmosphere 1005.0 90 > th dose independent rect. 3 6
99 397.09 humidity 80.0 90 > th dose dependent rect. 4 1
100 397.23 wind 3.0 10 < th dose dependent rect. 3 9
108 397.69 radiation 40.0 1440 < th dose dependent rect. 18 10
113 398.00 atmosphere 1015.0 90 < th dose dependent rect. 4 1
120 398.46 wind 9.0 10 < th dose dependent rect. 3 19
121 398.48 temperature 15.0 90 > th dose independent rect. 5 23
126 398.72 temperature 15.0 10 > th dose independent rect. 6 22
129 398.93 atmosphere 1005.0 90 > th dose independent rect. 4 1
134 399.27 precipitation 0.1 90 < th dose independent rect. 3 2
135 399.27 precipitation 0.1 90 < th dose dependent rect. 3 2
152 399.42 temperature 20.0 10 > th dose independent rect. 4 2
158 399.59 wind 3.0 10 < th dose dependent rect. 3 19
161 399.72 atmosphere 1005.0 10 > th dose independent rect. 4 2
163 399.74 temperature 15.0 90 > th dose independent rect. 22 5
166 399.81 humidity 70.0 720 < th dose dependent rect. 18 13
169 399.84 humidity 70.0 720 < th dose dependent rect. 18 2
210 400.57 radiation 1.0 90 < th dose dependent rect. 4 1
213 400.61 wind 9.0 90 < th dose independent rect. 4 1
214 400.61 temperature 10.0 90 > th dose independent rect. 4 1
217 400.61 humidity 50.0 90 > th dose independent rect. 4 1
220 400.61 atmosphere 995.0 90 > th dose independent rect. 4 1
221 400.61 atmosphere 1010.0 90 < th dose independent rect. 4 1
223 400.61 radiation 20.0 90 < th dose independent rect. 4 1
228 400.62 radiation 40.0 90 < th dose dependent rect. 4 1
233 400.68 radiation 1.0 90 < th dose independent rect. 4 1
237 400.68 precipitation 0.1 90 < th dose independent rect. 5 22
238 400.68 precipitation 0.1 90 < th dose dependent rect. 5 22
283 401.41 temperature 20.0 30 > th dose independent rect. 4 18
308 401.73 wind 9.0 90 < th dose independent rect. 5 23
334 402.00 temperature 30.0 1440 < th dose independent rect. 18 8
339 402.17 wind 7.0 90 < th dose independent rect. 3 19
340 402.18 temperature 15.0 90 > th dose independent rect. 17 10
342 402.20 wind 7.0 270 < th dose independent rect. 24 22
348 402.29 atmosphere 1005.0 10 > th dose independent rect. 4 5
379 402.58 temperature 30.0 1440 < th dose independent rect. 18 3
380 402.58 precipitation 0.1 90 < th dose independent rect. 22 5
381 402.58 precipitation 0.1 90 < th dose dependent rect. 22 5
387 402.64 temperature 30.0 90 < th dose independent rect. 22 5
388 402.64 humidity 50.0 90 > th dose independent rect. 22 5
391 402.64 atmosphere 995.0 90 > th dose independent rect. 22 5
392 402.64 radiation 1.0 90 < th dose independent rect. 22 5
398 402.64 atmosphere 1015.0 90 < th dose independent rect. 3 19
399 402.64 radiation 1.0 90 < th dose dependent rect. 22 5
405 402.66 wind 9.0 90 < th dose independent rect. 22 5
406 402.68 humidity 80.0 10 > th dose independent rect. 4 2
418 402.81 temperature 15.0 270 > th dose independent rect. 22 2
420 402.83 temperature 30.0 1440 < th dose independent rect. 18 14
421 402.84 humidity 70.0 1440 > th dose independent rect. 18 2
423 402.85 humidity 70.0 1440 > th dose independent rect. 18 13
427 402.88 humidity 70.0 1440 > th dose independent rect. 18 4
438 402.93 temperature 10.0 90 > th dose dependent rect. 3 19
453 403.17 temperature 15.0 90 > th dose independent rect. 19 8
460 403.29 atmosphere 995.0 90 > th dose independent rect. 3 19
467 403.36 radiation 40.0 1440 > th dose dependent rect. 13 2
488 403.45 humidity 70.0 10 > th dose dependent rect. 4 2
509 403.57 humidity 50.0 90 > th dose dependent rect. 22 5
535 403.72 precipitation 0.1 270 < th dose independent rect. 24 22
536 403.72 precipitation 0.1 270 < th dose dependent rect. 24 22
543 403.80 precipitation 0.1 90 < th dose independent rect. 3 19
544 403.80 precipitation 0.1 90 < th dose dependent rect. 3 19
560 403.84 atmosphere 1005.0 270 > th dose independent rect. 1 5
565 403.94 radiation 20.0 14400 < th dose independent rect. 4 2
572 404.00 temperature 10.0 90 > th dose dependent rect. 22 5
573 404.01 wind 9.0 90 < th dose dependent rect. 22 5
593 404.24 precipitation 0.1 10 < th dose independent rect. 22 5
594 404.24 precipitation 0.1 10 < th dose independent rect. 6 22
595 404.24 precipitation 0.1 10 < th dose dependent rect. 22 5
597 404.24 precipitation 0.1 10 < th dose dependent rect. 6 22
614 404.29 atmosphere 1015.0 1440 < th dose independent rect. 24 4
616 404.30 wind 3.0 10 < th dose dependent rect. 3 17
730 404.85 temperature 15.0 270 > th dose independent rect. 24 22
738 404.90 precipitation 0.1 10 < th dose independent rect. 4 2
739 404.90 precipitation 0.1 10 < th dose dependent rect. 4 2
742 404.93 atmosphere 1015.0 10 < th dose dependent rect. 4 2
758 405.01 wind 7.0 10 < th dose independent rect. 4 2
760 405.01 temperature 10.0 10 > th dose independent rect. 4 2
762 405.01 temperature 30.0 10 < th dose independent rect. 4 2
763 405.01 humidity 50.0 10 > th dose independent rect. 4 2
766 405.01 atmosphere 995.0 10 > th dose independent rect. 4 2
767 405.01 atmosphere 1010.0 10 < th dose independent rect. 4 2
769 405.01 radiation 20.0 10 < th dose independent rect. 4 2
807 405.11 radiation 1.0 90 < th dose dependent rect. 3 13
819 405.20 wind 9.0 1440 < th dose independent rect. 4 2
820 405.20 temperature 10.0 1440 > th dose independent rect. 4 2
823 405.20 temperature 30.0 1440 < th dose independent rect. 4 2
827 405.20 humidity 50.0 1440 > th dose independent rect. 4 2
836 405.20 atmosphere 995.0 1440 > th dose independent rect. 4 2
837 405.20 atmosphere 1015.0 1440 < th dose independent rect. 4 2
848 405.20 temperature 10.0 1440 > th dose independent rect. 6 22
865 405.30 temperature 30.0 270 < th dose independent rect. 22 2
866 405.30 humidity 50.0 270 > th dose independent rect. 22 2
869 405.30 atmosphere 995.0 270 > th dose independent rect. 22 2
870 405.30 radiation 1.0 270 < th dose independent rect. 22 2
876 405.30 radiation 1.0 270 < th dose dependent rect. 22 2
883 405.33 wind 9.0 270 < th dose independent rect. 22 2
887 405.35 precipitation 0.1 270 < th dose independent rect. 22 2
888 405.35 precipitation 0.1 270 < th dose dependent rect. 22 2
901 405.48 wind 1.0 270 > th dose independent rect. 2 2
910 405.58 temperature 30.0 1440 > th dose dependent rect. 15 4
928 405.61 temperature 30.0 1440 > th dose dependent rect. 15 1
942 405.74 radiation 40.0 10 < th dose dependent rect. 4 2
958 405.92 atmosphere 995.0 90 > th dose dependent rect. 4 1
960 405.95 temperature 30.0 1440 > th dose dependent sin 12 NA