Os01g0361000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0361000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.65 | 0.324 | 11.7 | -0.721 | 0.535 | 0.389 | 0.112 | 1.04 | -0.0344 | 22.6 | 29.7 | 271 | -- | -- |
| 47.88 | 0.322 | 11.7 | -0.616 | 0.533 | 0.497 | 0.122 | -- | -0.0174 | 22.5 | 29.67 | 275 | -- | -- |
| 47.68 | 0.322 | 11.7 | -0.728 | 0.532 | 0.391 | -- | 0.986 | -0.0273 | 22.5 | 29.6 | 271 | -- | -- |
| 47.94 | 0.322 | 11.7 | -0.62 | 0.532 | 0.495 | -- | -- | -0.0181 | 22.5 | 29.65 | 275 | -- | -- |
| 62.58 | 0.368 | 11.7 | -0.691 | -- | 0.381 | -- | 0.625 | -0.0119 | -- | 28.7 | 196 | -- | -- |
| 53.84 | 0.344 | 11.7 | -0.693 | 0.542 | -- | 0.127 | -- | -0.0132 | 24 | -- | -- | -- | -- |
| 53.91 | 0.344 | 11.7 | -0.698 | 0.541 | -- | -- | -- | -0.0137 | 24 | -- | -- | -- | -- |
| 62.29 | 0.369 | 11.7 | -0.603 | -- | 0.368 | -- | -- | 0.0131 | -- | 28.7 | 182 | -- | -- |
| 57.84 | 0.354 | 11.7 | -- | 0.537 | 0.599 | -- | -- | 0.0488 | 22.2 | 29.66 | 277 | -- | -- |
| 72.36 | 0.397 | 11.7 | -0.682 | -- | -- | -- | -- | -0.00635 | -- | -- | -- | -- | -- |
| 66.76 | 0.382 | 11.7 | -- | 0.533 | -- | -- | -- | 0.0641 | 23.9 | -- | -- | -- | -- |
| 70.82 | 0.392 | 11.6 | -- | -- | 0.418 | -- | -- | 0.109 | -- | 27.8 | 105 | -- | -- |
| 84.63 | 0.429 | 11.7 | -- | -- | -- | -- | -- | 0.0693 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.13 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 19 |
| 10 | 46.08 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 10 |
| 11 | 46.17 | humidity | 90 | 90 | < th | dose dependent | rect. | 12 | 9 |
| 14 | 46.20 | humidity | 70 | 270 | > th | dose independent | rect. | 14 | 10 |
| 18 | 46.26 | humidity | 50 | 270 | > th | dose independent | rect. | 14 | 10 |
| 19 | 46.26 | humidity | 60 | 270 | > th | dose independent | rect. | 5 | 19 |
| 26 | 46.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 32 | 46.44 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 5 | 19 |
| 45 | 46.59 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 22 |
| 46 | 46.60 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 84 | 46.93 | temperature | 15 | 30 | > th | dose dependent | rect. | 12 | 17 |
| 101 | 47.01 | humidity | 50 | 270 | > th | dose independent | rect. | 2 | 23 |
| 117 | 47.04 | humidity | 50 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 118 | 47.05 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 8 |
| 156 | 47.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 17 |
| 165 | 47.14 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 12 |
| 198 | 47.18 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 201 | 47.19 | radiation | 40 | 270 | < th | dose independent | rect. | 6 | 18 |
| 221 | 47.23 | radiation | 20 | 270 | < th | dose dependent | rect. | 7 | 17 |
| 242 | 47.27 | humidity | 50 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 244 | 47.28 | humidity | 80 | 90 | < th | dose independent | rect. | 12 | 9 |
| 284 | 47.32 | humidity | 50 | 270 | > th | dose dependent | rect. | 14 | 10 |
| 332 | 47.41 | radiation | 10 | 270 | < th | dose dependent | rect. | 14 | 10 |
| 354 | 47.44 | radiation | 30 | 270 | < th | dose dependent | rect. | 14 | 10 |
| 417 | 47.52 | humidity | 50 | 10 | > th | dose dependent | rect. | 11 | 14 |
| 442 | 47.57 | radiation | 10 | 270 | < th | dose independent | rect. | 14 | 10 |
| 460 | 47.59 | humidity | 60 | 10 | > th | dose dependent | rect. | 14 | 11 |
| 465 | 47.60 | humidity | 80 | 270 | < th | dose dependent | sin | 19 | NA |
| 514 | 47.66 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 16 |
| 515 | 47.66 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 8 |
| 596 | 47.72 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 6 | 18 |
| 613 | 47.74 | humidity | 60 | 10 | > th | dose dependent | rect. | 16 | 9 |
| 649 | 47.77 | temperature | 10 | 90 | > th | dose dependent | rect. | 24 | 22 |
| 666 | 47.79 | temperature | 30 | 10 | < th | dose independent | rect. | 8 | 17 |
| 696 | 47.82 | radiation | 20 | 270 | < th | dose independent | rect. | 6 | 18 |
| 717 | 47.84 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 13 |
| 767 | 47.89 | humidity | 90 | 30 | < th | dose dependent | rect. | 15 | 6 |
| 782 | 47.90 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 813 | 47.95 | temperature | 30 | 270 | < th | dose independent | sin | 22 | NA |
| 856 | 47.98 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 869 | 47.99 | humidity | 70 | 270 | < th | dose independent | sin | 18 | NA |
| 873 | 47.99 | temperature | 25 | 30 | > th | dose dependent | sin | 17 | NA |
| 884 | 48.00 | radiation | 40 | 270 | < th | dose independent | rect. | 5 | 8 |
| 894 | 48.00 | temperature | 25 | 270 | > th | dose dependent | sin | 21 | NA |
| 917 | 48.01 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 23 |
| 918 | 48.01 | humidity | 50 | 270 | > th | dose independent | rect. | 13 | 23 |
| 920 | 48.01 | humidity | 80 | 30 | < th | dose dependent | sin | 15 | NA |
| 929 | 48.02 | humidity | 70 | 270 | > th | dose independent | sin | 18 | NA |
| 961 | 48.03 | temperature | 30 | 270 | < th | dose independent | rect. | 18 | 23 |
| 971 | 48.04 | temperature | 30 | 270 | > th | dose independent | sin | 22 | NA |
| 987 | 48.05 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 6 |
| 998 | 48.05 | radiation | 1 | 270 | < th | dose dependent | rect. | 24 | 8 |