Os01g0360600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dephospho-CoA kinase family protein.
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Os01g0360600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dephospho-CoA kinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.91 | 0.253 | 10.4 | -0.485 | 0.786 | 0.815 | -0.427 | 0.587 | -0.374 | 20.7 | 20.6 | 31 | -- | -- |
| 29.18 | 0.252 | 10.4 | -0.573 | 0.795 | 0.835 | -0.454 | -- | -0.39 | 20.7 | 20.63 | 44 | -- | -- |
| 29.46 | 0.255 | 10.4 | -0.417 | 0.809 | 0.782 | -- | 0.85 | -0.358 | 20.7 | 20.6 | 31 | -- | -- |
| 29.97 | 0.255 | 10.4 | -0.554 | 0.786 | 0.825 | -- | -- | -0.4 | 20.6 | 20.84 | 46 | -- | -- |
| 46.71 | 0.318 | 10.4 | -0.923 | -- | 1.18 | -- | -1.36 | -0.529 | -- | 21.61 | 533 | -- | -- |
| 40.8 | 0.299 | 10.3 | -0.396 | 0.847 | -- | -0.255 | -- | -0.259 | 19.3 | -- | -- | -- | -- |
| 40.97 | 0.3 | 10.3 | -0.39 | 0.847 | -- | -- | -- | -0.259 | 19.3 | -- | -- | -- | -- |
| 47.74 | 0.322 | 10.4 | -0.66 | -- | 1.1 | -- | -- | -0.458 | -- | 20.7 | 515 | -- | -- |
| 37.81 | 0.286 | 10.4 | -- | 0.779 | 0.647 | -- | -- | -0.307 | 20.3 | 21.66 | 44 | -- | -- |
| 79.03 | 0.415 | 10.3 | -0.404 | -- | -- | -- | -- | -0.274 | -- | -- | -- | -- | -- |
| 44.96 | 0.314 | 10.3 | -- | 0.851 | -- | -- | -- | -0.216 | 19.2 | -- | -- | -- | -- |
| 57.84 | 0.354 | 10.3 | -- | -- | 0.926 | -- | -- | -0.307 | -- | 24.1 | 478 | -- | -- |
| 83.35 | 0.426 | 10.3 | -- | -- | -- | -- | -- | -0.229 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.60 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 61 | 28.48 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 72 | 28.77 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 77 | 28.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 79 | 28.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 87 | 28.97 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 88 | 28.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 92 | 29.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 126 | 29.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 21 |
| 136 | 29.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 168 | 29.55 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 173 | 29.59 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 181 | 29.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 188 | 29.63 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 193 | 29.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 199 | 29.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 204 | 29.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 246 | 29.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 250 | 29.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 257 | 29.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 274 | 30.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 311 | 30.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 12 |
| 346 | 30.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 380 | 30.39 | temperature | 25 | 90 | > th | dose independent | rect. | 21 | 23 |
| 422 | 30.53 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 426 | 30.55 | temperature | 25 | 90 | > th | dose independent | rect. | 23 | 21 |
| 432 | 30.55 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 494 | 30.69 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 507 | 30.72 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 589 | 30.87 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 23 |
| 599 | 30.89 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 23 |
| 604 | 30.91 | temperature | 25 | 90 | > th | dose independent | rect. | 12 | 23 |
| 638 | 30.98 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 22 |
| 656 | 31.00 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 23 |
| 693 | 31.05 | temperature | 25 | 90 | > th | dose independent | no | NA | NA |
| 727 | 31.09 | temperature | 30 | 90 | < th | dose dependent | sin | 6 | NA |
| 735 | 31.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 771 | 31.16 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 832 | 31.25 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 23 |
| 840 | 31.26 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 869 | 31.28 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 23 |
| 924 | 31.33 | temperature | 25 | 90 | < th | dose independent | no | NA | NA |
| 931 | 31.34 | temperature | 25 | 90 | < th | dose independent | rect. | 17 | 23 |
| 945 | 31.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 20 |