Os01g0359400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os01g0359400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.58 | 0.505 | 7.38 | -1.25 | 1.54 | -0.976 | -0.958 | -2.12 | 0.127 | 13.4 | 69.02 | 1203 | -- | -- |
| 123.49 | 0.518 | 7.36 | -0.988 | 1.53 | -1.1 | -0.545 | -- | 0.117 | 13.5 | 68 | 1164 | -- | -- |
| 118.86 | 0.508 | 7.38 | -1.21 | 1.54 | -0.987 | -- | -1.71 | 0.136 | 13.5 | 69 | 1193 | -- | -- |
| 123.99 | 0.519 | 7.34 | -0.997 | 1.52 | -1.12 | -- | -- | 0.202 | 13.6 | 69.16 | 1167 | -- | -- |
| 242.27 | 0.725 | 7.35 | -1.1 | -- | -1.75 | -- | -0.999 | 0.236 | -- | 70 | 1131 | -- | -- |
| 166.6 | 0.605 | 7.35 | -1.22 | 1.82 | -- | -0.368 | -- | 0.123 | 13.4 | -- | -- | -- | -- |
| 167.14 | 0.605 | 7.36 | -1.23 | 1.82 | -- | -- | -- | 0.122 | 13.4 | -- | -- | -- | -- |
| 243.23 | 0.726 | 7.31 | -0.85 | -- | -1.82 | -- | -- | 0.326 | -- | 71 | 1117 | -- | -- |
| 148.95 | 0.568 | 7.31 | -- | 1.49 | -1.23 | -- | -- | 0.379 | 13.7 | 70.92 | 1179 | -- | -- |
| 370.99 | 0.9 | 7.38 | -1.3 | -- | -- | -- | -- | 0.0832 | -- | -- | -- | -- | -- |
| 207.03 | 0.673 | 7.33 | -- | 1.84 | -- | -- | -- | 0.259 | 13.4 | -- | -- | -- | -- |
| 264.9 | 0.758 | 7.31 | -- | -- | -1.94 | -- | -- | 0.421 | -- | 70.83 | 1122 | -- | -- |
| 415.7 | 0.952 | 7.35 | -- | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.19 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 2 | 108.50 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 3 | 108.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 15 |
| 4 | 108.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 6 | 109.14 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 23 | 111.84 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 15 |
| 26 | 112.03 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 19 | 8 |
| 43 | 113.51 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 44 | 113.51 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 46 | 113.55 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 48 | 113.61 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 54 | 113.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 55 | 113.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 61 | 114.06 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 63 | 114.33 | humidity | 80.0 | 270 | > th | dose independent | rect. | 17 | 7 |
| 64 | 114.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 65 | 114.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 66 | 114.34 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 67 | 114.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 69 | 114.49 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 71 | 114.58 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 74 | 114.67 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 75 | 114.80 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 76 | 114.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 9 |
| 77 | 114.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 82 | 114.96 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 94 | 115.34 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 95 | 115.40 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 19 |
| 96 | 115.40 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 101 | 115.56 | humidity | 80.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 111 | 115.70 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 113 | 115.71 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 121 | 115.73 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 124 | 115.73 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 127 | 115.73 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 128 | 115.73 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 138 | 115.81 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 152 | 116.18 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 161 | 116.38 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 167 | 116.46 | wind | 1.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 173 | 116.54 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 191 | 116.78 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 4 |
| 194 | 116.78 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 4 |
| 200 | 116.90 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 210 | 116.99 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 6 |
| 212 | 117.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 6 |
| 235 | 117.07 | wind | 7.0 | 10 | < th | dose dependent | rect. | 3 | 4 |
| 238 | 117.08 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 249 | 117.19 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 256 | 117.26 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 259 | 117.26 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 321 | 117.52 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 322 | 117.52 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 324 | 117.54 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 362 | 117.92 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 19 |
| 397 | 118.27 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 414 | 118.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 421 | 118.47 | wind | 5.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 442 | 118.67 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 447 | 118.73 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 7 |
| 486 | 118.98 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 17 |
| 488 | 118.98 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 490 | 118.99 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 7 | 20 |
| 504 | 119.07 | temperature | 15.0 | 10 | > th | dose independent | rect. | 7 | 20 |
| 515 | 119.19 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 518 | 119.22 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 9 | 17 |
| 545 | 119.30 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 563 | 119.42 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 16 | 11 |
| 569 | 119.47 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 9 | 15 |
| 575 | 119.54 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 588 | 119.54 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 589 | 119.54 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 613 | 119.63 | wind | 9.0 | 10 | < th | dose independent | rect. | 7 | 20 |
| 620 | 119.67 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 4 |
| 622 | 119.69 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 6 |
| 628 | 119.72 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 669 | 119.89 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 4 |
| 671 | 119.89 | temperature | 30.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 672 | 119.89 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 4 |
| 675 | 119.89 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 4 |
| 676 | 119.89 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 677 | 119.89 | radiation | 20.0 | 10 | < th | dose independent | rect. | 3 | 4 |
| 694 | 119.92 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 704 | 119.97 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 744 | 120.27 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 770 | 120.32 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 804 | 120.48 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 810 | 120.50 | wind | 5.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 815 | 120.51 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 858 | 120.65 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 862 | 120.67 | humidity | 80.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 874 | 120.73 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 14 | 13 |
| 909 | 120.79 | wind | 9.0 | 30 | < th | dose dependent | rect. | 7 | 20 |
| 922 | 120.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 22 |
| 923 | 120.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 958 | 120.98 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 990 | 121.06 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 17 | 11 |