Os01g0358700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Powdery mildew resistance protein PM3b.
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Os01g0358700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Powdery mildew resistance protein PM3b.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.83 | 0.56 | 2.74 | 1.9 | 0.0448 | -15 | 0.21 | 91.7 | 0.0289 | 11.3 | 995 | 1442 | -- | -- |
| 144.73 | 0.565 | 3.06 | 0.0721 | 0.0784 | 0.0831 | 0.176 | -- | 0.0207 | 8.87 | 995 | 1442 | -- | -- |
| 141.93 | 0.555 | 2.74 | 1.9 | 0.0593 | -15.1 | -- | 91.9 | 0.0288 | 8.47 | 994.9 | 1466 | -- | -- |
| 142.39 | 0.556 | 3.05 | 0.0577 | 0.0699 | 0.665 | -- | -- | 0.0445 | 8.43 | 997.4 | 1212 | -- | -- |
| 142.13 | 0.555 | 2.75 | 1.86 | -- | -15.2 | -- | 92.3 | 0.0309 | -- | 994.6 | 1477 | -- | -- |
| 144.74 | 0.564 | 3.06 | 0.0728 | 0.0774 | -- | 0.177 | -- | 0.0204 | 8.94 | -- | -- | -- | -- |
| 144.81 | 0.564 | 3.06 | 0.0777 | 0.0832 | -- | -- | -- | 0.0198 | 7.75 | -- | -- | -- | -- |
| 142.69 | 0.556 | 3.06 | 0.0506 | -- | 0.684 | -- | -- | 0.0321 | -- | 997.5 | 1212 | -- | -- |
| 142.44 | 0.556 | 3.05 | -- | 0.0728 | 0.69 | -- | -- | 0.0251 | 8.28 | 997.5 | 1208 | -- | -- |
| 145.19 | 0.563 | 3.06 | 0.0788 | -- | -- | -- | -- | 0.021 | -- | -- | -- | -- | -- |
| 144.97 | 0.563 | 3.06 | -- | 0.0838 | -- | -- | -- | 0.0112 | 7.69 | -- | -- | -- | -- |
| 142.76 | 0.556 | 3.06 | -- | -- | 0.691 | -- | -- | 0.0266 | -- | 997.5 | 1212 | -- | -- |
| 145.35 | 0.563 | 3.06 | -- | -- | -- | -- | -- | 0.0123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.62 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 1 |
| 9 | 129.62 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 27 | 131.37 | temperature | 30 | 10 | > th | dose independent | rect. | 15 | 1 |
| 30 | 133.85 | radiation | 20 | 10 | > th | dose independent | rect. | 14 | 18 |
| 34 | 134.61 | radiation | 20 | 10 | > th | dose independent | rect. | 15 | 1 |
| 51 | 134.91 | radiation | 20 | 10 | > th | dose independent | sin | 13 | NA |
| 67 | 135.09 | radiation | 20 | 10 | < th | dose independent | sin | 13 | NA |
| 86 | 135.57 | radiation | 20 | 90 | > th | dose dependent | rect. | 14 | 18 |
| 87 | 135.66 | radiation | 30 | 90 | > th | dose independent | rect. | 14 | 18 |
| 124 | 136.14 | radiation | 20 | 90 | > th | dose dependent | rect. | 14 | 2 |
| 125 | 136.18 | radiation | 10 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 143 | 136.52 | wind | 5 | 10 | > th | dose independent | rect. | 14 | 2 |
| 212 | 137.37 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 4 | 1 |
| 216 | 137.37 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 243 | 137.61 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 258 | 137.80 | humidity | 90 | 90 | < th | dose independent | rect. | 2 | 2 |
| 262 | 137.82 | humidity | 80 | 90 | < th | dose dependent | rect. | 2 | 3 |
| 265 | 137.83 | humidity | 80 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 341 | 138.23 | radiation | 30 | 90 | > th | dose independent | rect. | 7 | 1 |
| 454 | 138.65 | temperature | 25 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 455 | 138.65 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 459 | 138.73 | radiation | 10 | 10 | > th | dose dependent | sin | 12 | NA |
| 463 | 138.76 | wind | 3 | 30 | > th | dose dependent | rect. | 14 | 2 |
| 466 | 138.78 | radiation | 30 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 486 | 138.84 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 2 |
| 525 | 138.94 | radiation | 20 | 90 | > th | dose dependent | sin | 13 | NA |
| 585 | 139.25 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 599 | 139.34 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 2 |
| 680 | 139.50 | humidity | 70 | 90 | < th | dose independent | rect. | 14 | 1 |
| 699 | 139.64 | temperature | 30 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 718 | 139.67 | radiation | 20 | 10 | < th | dose independent | rect. | 14 | 12 |
| 763 | 139.77 | temperature | 30 | 270 | > th | dose independent | rect. | 12 | 1 |
| 792 | 139.91 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 807 | 139.94 | humidity | 60 | 90 | > th | dose independent | rect. | 14 | 1 |
| 858 | 140.08 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 4 |
| 861 | 140.09 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 1 |
| 882 | 140.13 | radiation | 20 | 10 | < th | dose dependent | rect. | 14 | 12 |
| 885 | 140.14 | temperature | 25 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 894 | 140.19 | humidity | 60 | 10 | > th | dose independent | rect. | 14 | 2 |
| 904 | 140.23 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 958 | 140.31 | radiation | 20 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 961 | 140.34 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 973 | 140.38 | radiation | 40 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 987 | 140.45 | humidity | 90 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 998 | 140.47 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 14 |