Os01g0357800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0357800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.94 | 0.361 | 10.8 | -1.29 | 0.594 | 0.612 | -0.319 | 0.461 | -0.058 | 21.9 | 24.76 | 6716 | -- | -- |
| 59 | 0.358 | 10.8 | -1.42 | 0.585 | 0.642 | -0.318 | -- | -0.0692 | 22 | 25.86 | 6615 | -- | -- |
| 59.02 | 0.358 | 10.8 | -1.21 | 0.605 | 0.624 | -- | 0.687 | -0.108 | 22.1 | 23.86 | 7917 | -- | -- |
| 59.2 | 0.358 | 10.8 | -1.41 | 0.593 | 0.667 | -- | -- | -0.174 | 22.1 | 25.29 | 7987 | -- | -- |
| 80.14 | 0.417 | 10.8 | -1.3 | -- | 0.713 | -- | 0.418 | -0.158 | -- | 25.18 | 8017 | -- | -- |
| 76.07 | 0.409 | 10.7 | -1.16 | 0.65 | -- | -0.211 | -- | 0.0416 | 22.1 | -- | -- | -- | -- |
| 76.24 | 0.409 | 10.7 | -1.16 | 0.65 | -- | -- | -- | 0.0419 | 22.2 | -- | -- | -- | -- |
| 79.88 | 0.416 | 10.8 | -1.43 | -- | 0.736 | -- | -- | -0.0973 | -- | 25.36 | 6585 | -- | -- |
| 104.87 | 0.477 | 10.8 | -- | 0.61 | 0.364 | -- | -- | 0.0458 | 21.7 | 29.01 | 8040 | -- | -- |
| 101.87 | 0.472 | 10.7 | -1.15 | -- | -- | -- | -- | 0.0431 | -- | -- | -- | -- | -- |
| 111.49 | 0.494 | 10.7 | -- | 0.645 | -- | -- | -- | 0.171 | 22 | -- | -- | -- | -- |
| 126.74 | 0.524 | 10.7 | -- | -- | 0.463 | -- | -- | 0.0667 | -- | 30.09 | 8031 | -- | -- |
| 136.59 | 0.546 | 10.7 | -- | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.38 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 2 | 58.59 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 5 | 58.81 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 7 | 59.03 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 8 | 59.10 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 9 | 59.11 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 10 | 59.11 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 11 | 59.11 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 17 | 59.16 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 18 | 59.17 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 21 | 59.18 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 26 | 59.23 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 45 | 59.29 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 62 | 59.31 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 67 | 59.33 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 71 | 59.34 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 104 | 59.48 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 131 | 59.64 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 198 | 59.78 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 199 | 59.78 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 17 | 8 |
| 203 | 59.79 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 17 | 8 |
| 207 | 59.80 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 238 | 59.82 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 1 | 10 |
| 266 | 59.91 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 320 | 60.03 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 327 | 60.05 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 328 | 60.05 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 331 | 60.07 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 338 | 60.10 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 339 | 60.10 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 363 | 60.15 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 16 |
| 381 | 60.19 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 399 | 60.26 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 7 | NA |
| 408 | 60.28 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 16 | 4 |
| 438 | 60.32 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 446 | 60.33 | temperature | 25.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 460 | 60.34 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 597 | 60.51 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 14 |
| 603 | 60.53 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 609 | 60.53 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 617 | 60.54 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 1 | 18 |
| 624 | 60.54 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 20 |
| 631 | 60.55 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 662 | 60.56 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 663 | 60.56 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 681 | 60.57 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 683 | 60.57 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 700 | 60.58 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 747 | 60.61 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 854 | 60.71 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 16 | 13 |
| 871 | 60.72 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 890 | 60.74 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 920 | 60.76 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 927 | 60.77 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 931 | 60.78 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 2 |