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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0356900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Extensin-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0504) R2 : 0.431
β1 : 0.883 (0.183) R2dD : 0.0305 R2D : 0.0157
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.9 (0.165) R2dE : 0.182 R2E : 0.147
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.49 (0.737) R2dD*E : 0.221 R2D*E : 0.233
γ1 : 0.428 (0.111) R2dN8 : 0.0269 R2N8 : -0.00359
σ : 0.934
deviance : 401.79
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_____
C
peak time of C : --
E
wheather : wind
threshold : 6.8
memory length : 4318
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19
open length of G : 2.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
390.32 0.928 3.38 0.875 0.27 -1.88 1.57 -9.59 0.425 15.8 6.8 4320 19 2.04
543.19 1.09 3.38 0.9 0.269 -1.88 1.2 -- 0.424 15.6 6.8 4316 19 1.88
397.66 0.929 3.38 0.902 0.279 -1.9 -- -9.47 0.434 15.9 6.8 4319 19 2.05
480.4 1.02 3.38 0.863 0.16 -2.06 -- -- 0.422 15 7.661 4318 19.1 1.87
401.79 0.934 3.37 0.883 -- -1.9 -- -9.49 0.428 -- 6.8 4318 19 2.07
671.92 1.22 3.4 0.811 0.323 -- 1.52 -- 0.27 15.4 -- -- -- --
679.24 1.22 3.4 0.839 0.329 -- -- -- 0.279 15.3 -- -- -- --
455.2 0.994 3.37 1.12 -- -2.99 -- -- 0.429 -- 8.696 4318 18.9 2.15
457.88 0.997 3.38 -- 0.00799 -2.57 -- -- 0.422 2.78 8.8 4319 19.1 1.93
685.37 1.22 3.4 0.825 -- -- -- -- 0.27 -- -- -- -- --
697.79 1.24 3.42 -- 0.313 -- -- -- 0.185 15.3 -- -- -- --
439.06 0.976 3.37 -- -- -3.42 -- -- 0.43 -- 8.7 4318 18.9 2.13
703.33 1.24 3.42 -- -- -- -- -- 0.179 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 404.81 wind 7 4320 < th dose independent rect. 19 2
2 406.31 wind 5 4320 > th dose dependent rect. 20 2
6 409.17 wind 9 4320 > th dose dependent rect. 20 1
14 409.88 wind 9 4320 > th dose dependent rect. 19 7
26 411.11 wind 9 4320 > th dose independent rect. 19 2
41 412.97 wind 9 4320 > th dose independent rect. 19 7
60 414.27 wind 9 4320 < th dose independent rect. 18 9
92 416.98 wind 9 4320 < th dose independent rect. 20 7
138 427.69 atmosphere 995 14400 > th dose independent rect. 15 6
142 428.11 atmosphere 995 14400 < th dose independent rect. 15 4
153 428.82 atmosphere 995 14400 > th dose independent rect. 10 11
190 429.22 atmosphere 995 14400 < th dose independent rect. 16 1
220 429.88 atmosphere 995 14400 < th dose dependent rect. 16 1
222 429.92 atmosphere 995 14400 < th dose dependent rect. 15 4
240 430.45 atmosphere 995 14400 < th dose independent rect. 18 1
246 430.45 atmosphere 995 14400 < th dose dependent rect. 18 1
356 435.81 humidity 90 1440 < th dose dependent rect. 3 1
400 442.83 radiation 1 14400 < th dose dependent rect. 23 3
407 444.61 humidity 90 1440 < th dose dependent rect. 24 7
447 447.61 humidity 80 1440 < th dose independent rect. 22 1
460 448.11 humidity 90 1440 < th dose dependent rect. 2 5
495 450.55 radiation 1 14400 < th dose dependent rect. 19 7
506 451.23 atmosphere 995 14400 > th dose independent sin 22 NA
520 451.92 atmosphere 995 14400 < th dose independent sin 22 NA
531 452.30 atmosphere 995 14400 > th dose independent sin 4 NA
532 452.36 atmosphere 995 14400 < th dose dependent sin 23 NA
570 454.29 atmosphere 995 14400 < th dose independent sin 3 NA
588 454.85 humidity 90 1440 < th dose dependent rect. 24 4
737 458.85 humidity 90 1440 < th dose dependent rect. 5 1
812 459.66 atmosphere 995 14400 > th dose independent no NA NA
817 459.67 atmosphere 995 14400 > th dose independent rect. 12 23
818 459.67 atmosphere 995 14400 > th dose independent rect. 14 23
971 461.69 atmosphere 995 14400 < th dose independent no NA NA