Os01g0356100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os01g0356100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.38 | 0.511 | 9.68 | 1.62 | 1.43 | -2.11 | 0.267 | 1.48 | 0.221 | 5.78 | 21.8 | 2482 | -- | -- |
| 123.81 | 0.518 | 9.73 | 1.09 | 1.4 | -2.06 | 0.239 | -- | 0.0993 | 5.72 | 22 | 2398 | -- | -- |
| 116.84 | 0.503 | 9.67 | 1.53 | 1.41 | -2.01 | -- | 1.7 | 0.268 | 5.72 | 22.21 | 2351 | -- | -- |
| 123.05 | 0.517 | 9.73 | 0.935 | 1.38 | -2.02 | -- | -- | 0.116 | 5.73 | 22.2 | 2251 | -- | -- |
| 212.82 | 0.679 | 9.71 | 1.51 | -- | -2 | -- | 1.59 | 0.276 | -- | 22.2 | 2065 | -- | -- |
| 267.03 | 0.766 | 9.89 | 0.095 | 1.39 | -- | 0.557 | -- | -0.597 | 6.28 | -- | -- | -- | -- |
| 267.79 | 0.766 | 9.89 | 0.101 | 1.4 | -- | -- | -- | -0.599 | 6.25 | -- | -- | -- | -- |
| 217.02 | 0.686 | 9.76 | 1.18 | -- | -2.24 | -- | -- | 0.126 | -- | 21.7 | 2081 | -- | -- |
| 141.92 | 0.555 | 9.77 | -- | 1.39 | -1.74 | -- | -- | -0.0458 | 5.77 | 22.41 | 2243 | -- | -- |
| 369.08 | 0.898 | 9.92 | 0.139 | -- | -- | -- | -- | -0.568 | -- | -- | -- | -- | -- |
| 268.06 | 0.766 | 9.89 | -- | 1.4 | -- | -- | -- | -0.61 | 6.25 | -- | -- | -- | -- |
| 239.71 | 0.721 | 9.8 | -- | -- | -1.76 | -- | -- | -0.0332 | -- | 22.38 | 2019 | -- | -- |
| 369.59 | 0.897 | 9.92 | -- | -- | -- | -- | -- | -0.584 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 115.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 3 | 116.57 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 9 | 117.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 14 | 118.84 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 15 | 118.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 21 | 119.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 36 | 119.60 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 106 | 120.79 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 170 | 121.62 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 342 | 123.60 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 415 | 124.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 771 | 129.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 781 | 129.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 798 | 129.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 900 | 130.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 936 | 130.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |