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Os01g0354700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor (EC 1.10.99.1) (Rieske iron-sulfur protein) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) (ISP) (RISP).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.3 (0.0252) R2 : 0.191
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.549 (0.053) R2dN8 : 0.246 R2N8 : 0.191
σ : 0.474
deviance : 103.02
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.01 0.385 7.3 0.556 0.251 -0.264 -0.72 2.58 -0.531 21.4 19.96 685 -- --
72.64 0.4 7.28 0.636 0.32 0.152 -2.11 -- -0.473 18.7 16.02 1363 -- --
68.37 0.385 7.31 0.569 0.251 -0.243 -- 2.82 -0.545 21.3 19.66 728 -- --
81.22 0.42 7.31 0.583 0.303 -0.315 -- -- -0.536 20.9 20 1255 -- --
70.74 0.392 7.31 0.599 -- -0.389 -- 2.75 -0.6 -- 19.59 820 -- --
74.38 0.404 7.28 0.624 0.352 -- -2.03 -- -0.465 19.1 -- -- -- --
84.34 0.43 7.29 0.66 0.361 -- -- -- -0.473 20.4 -- -- -- --
82.94 0.424 7.29 0.582 -- -0.436 -- -- -0.531 -- 18.8 998 -- --
90.39 0.443 7.31 -- 0.309 -0.3 -- -- -0.565 20.2 20.25 1291 -- --
91.61 0.447 7.28 0.658 -- -- -- -- -0.476 -- -- -- -- --
95.81 0.458 7.3 -- 0.359 -- -- -- -0.546 20.5 -- -- -- --
91.15 0.445 7.32 -- -- -0.575 -- -- -0.655 -- 12.33 1073 -- --
103.02 0.474 7.3 -- -- -- -- -- -0.549 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.47 radiation 10.0 30 < th dose independent rect. 4 4
3 65.61 temperature 20.0 10 > th dose dependent rect. 4 3
5 65.74 temperature 15.0 720 > th dose independent rect. 8 7
6 65.74 humidity 50.0 43200 < th dose dependent rect. 20 9
7 65.89 temperature 15.0 90 > th dose independent rect. 5 23
8 65.98 temperature 15.0 1440 > th dose independent rect. 6 8
9 65.98 humidity 50.0 43200 < th dose independent rect. 20 10
10 65.98 radiation 20.0 720 < th dose independent rect. 20 21
11 66.01 temperature 15.0 1440 > th dose independent rect. 8 4
14 66.03 humidity 50.0 43200 < th dose dependent rect. 20 1
16 66.12 radiation 20.0 720 < th dose independent rect. 20 17
21 66.18 temperature 20.0 30 > th dose independent rect. 4 3
30 66.28 humidity 90.0 720 < th dose independent rect. 8 6
32 66.33 atmosphere 1015.0 1440 < th dose independent rect. 3 5
35 66.36 radiation 1.0 720 > th dose independent rect. 8 7
36 66.36 radiation 30.0 720 < th dose dependent rect. 20 17
42 66.42 humidity 80.0 10 > th dose dependent rect. 4 7
43 66.42 radiation 40.0 720 < th dose dependent rect. 20 21
45 66.43 radiation 20.0 720 < th dose dependent rect. 20 19
47 66.45 humidity 80.0 10 > th dose independent rect. 4 6
66 66.57 radiation 20.0 720 < th dose independent rect. 15 22
67 66.58 radiation 20.0 720 < th dose independent rect. 5 12
75 66.61 radiation 20.0 720 < th dose independent rect. 5 19
83 66.65 temperature 20.0 270 > th dose dependent rect. 1 5
91 66.70 temperature 15.0 1440 > th dose independent rect. 8 19
97 66.74 humidity 70.0 720 < th dose independent rect. 18 2
110 66.76 radiation 30.0 720 < th dose independent rect. 5 8
115 66.78 radiation 20.0 720 < th dose independent rect. 1 16
127 66.80 radiation 20.0 720 < th dose independent sin 4 NA
138 66.82 radiation 20.0 4320 < th dose independent rect. 5 1
140 66.82 temperature 15.0 1440 > th dose independent rect. 6 10
146 66.84 temperature 20.0 270 < th dose dependent rect. 3 8
150 66.86 radiation 20.0 720 < th dose independent rect. 5 22
153 66.87 temperature 15.0 720 > th dose independent rect. 24 20
164 66.90 atmosphere 1010.0 10 < th dose independent rect. 4 3
167 66.91 temperature 20.0 270 > th dose independent rect. 3 2
168 66.91 atmosphere 1015.0 1440 < th dose independent rect. 3 3
177 66.92 radiation 10.0 720 < th dose dependent rect. 6 18
178 66.93 radiation 1.0 4320 > th dose independent rect. 8 3
179 66.93 radiation 20.0 720 < th dose independent rect. 3 14
184 66.94 radiation 1.0 720 > th dose dependent rect. 8 5
192 66.95 radiation 20.0 720 < th dose independent rect. 9 23
196 66.96 temperature 15.0 720 > th dose independent rect. 3 17
197 66.96 temperature 15.0 1440 > th dose independent rect. 6 21
200 66.96 humidity 80.0 10 > th dose dependent rect. 4 14
203 66.97 radiation 30.0 1440 < th dose independent rect. 11 1
215 66.99 radiation 20.0 720 < th dose independent rect. 1 23
217 66.99 humidity 80.0 10 > th dose dependent rect. 4 12
219 67.00 temperature 15.0 720 > th dose independent rect. 17 14
231 67.02 humidity 80.0 720 < th dose dependent rect. 18 1
250 67.05 radiation 20.0 720 < th dose independent rect. 12 23
252 67.06 humidity 80.0 10 > th dose dependent rect. 4 9
256 67.07 humidity 50.0 43200 < th dose independent rect. 19 3
263 67.07 atmosphere 1015.0 720 < th dose independent rect. 2 18
278 67.09 temperature 15.0 720 > th dose independent rect. 22 14
280 67.09 radiation 10.0 720 < th dose dependent rect. 9 4
289 67.11 temperature 15.0 1440 > th dose independent rect. 6 12
317 67.15 humidity 60.0 43200 < th dose dependent rect. 22 4
319 67.16 precipitation 0.1 1440 < th dose independent rect. 8 5
322 67.16 precipitation 0.1 1440 < th dose dependent rect. 8 5
323 67.16 radiation 40.0 720 < th dose dependent rect. 5 12
328 67.17 temperature 15.0 720 > th dose independent rect. 8 22
332 67.17 radiation 40.0 720 < th dose dependent rect. 5 8
355 67.20 radiation 20.0 720 < th dose independent no NA NA
359 67.20 humidity 70.0 1440 > th dose dependent rect. 9 2
370 67.21 temperature 20.0 10 > th dose dependent rect. 24 7
383 67.23 humidity 90.0 30 > th dose independent rect. 4 12
385 67.23 atmosphere 1015.0 720 < th dose independent rect. 24 20
390 67.23 radiation 20.0 720 < th dose dependent rect. 5 21
392 67.24 atmosphere 1015.0 720 < th dose independent rect. 24 15
396 67.24 radiation 1.0 720 > th dose dependent rect. 17 21
423 67.26 radiation 1.0 720 > th dose dependent sin 3 NA
431 67.27 radiation 10.0 30 > th dose independent sin 10 NA
444 67.28 radiation 30.0 720 < th dose dependent rect. 5 10
448 67.29 temperature 15.0 720 > th dose independent rect. 24 15
452 67.29 radiation 10.0 720 < th dose dependent rect. 7 8
469 67.31 humidity 50.0 43200 > th dose independent rect. 20 9
476 67.32 humidity 50.0 43200 > th dose independent rect. 20 11
484 67.32 radiation 40.0 1440 < th dose dependent rect. 16 20
499 67.34 temperature 15.0 1440 > th dose independent sin 2 NA
500 67.34 humidity 60.0 43200 < th dose independent rect. 22 4
506 67.34 temperature 10.0 43200 < th dose dependent rect. 22 7
520 67.35 temperature 10.0 43200 > th dose independent sin 1 NA
524 67.35 temperature 10.0 43200 > th dose independent rect. 8 21
529 67.35 temperature 10.0 43200 < th dose dependent rect. 23 5
563 67.36 temperature 15.0 1440 > th dose independent rect. 2 12
564 67.36 temperature 10.0 43200 > th dose independent rect. 2 16
583 67.37 temperature 10.0 43200 > th dose independent rect. 2 12
585 67.37 radiation 20.0 1440 < th dose independent rect. 16 19
595 67.37 radiation 40.0 720 < th dose dependent rect. 14 23
596 67.38 temperature 10.0 43200 > th dose independent rect. 2 14
601 67.38 temperature 10.0 43200 > th dose independent rect. 10 19
604 67.38 temperature 10.0 43200 < th dose dependent sin 10 NA
605 67.38 temperature 20.0 270 < th dose dependent sin 4 NA
606 67.38 temperature 30.0 720 > th dose dependent rect. 18 1
607 67.38 radiation 1.0 1440 > th dose dependent rect. 10 1
625 67.38 temperature 10.0 43200 < th dose dependent rect. 3 21
626 67.38 temperature 10.0 43200 < th dose dependent rect. 2 23
631 67.39 temperature 15.0 720 > th dose independent rect. 18 11
670 67.40 radiation 40.0 1440 < th dose dependent rect. 8 4
728 67.41 temperature 10.0 43200 > th dose independent rect. 1 2
730 67.41 radiation 30.0 1440 < th dose independent rect. 8 4
732 67.41 humidity 50.0 43200 > th dose independent rect. 19 5
740 67.41 temperature 10.0 43200 < th dose dependent no NA NA
817 67.42 radiation 1.0 4320 > th dose independent rect. 8 1
818 67.42 temperature 10.0 43200 > th dose independent rect. 8 6
842 67.42 wind 9.0 270 < th dose dependent rect. 8 22
848 67.43 wind 1.0 90 < th dose independent rect. 4 1
867 67.44 temperature 10.0 43200 < th dose independent rect. 22 7
881 67.44 humidity 60.0 1440 < th dose dependent rect. 16 20
885 67.45 temperature 10.0 43200 < th dose independent rect. 23 5
896 67.45 temperature 10.0 43200 > th dose independent rect. 2 21
911 67.46 temperature 15.0 720 > th dose independent sin 11 NA
946 67.46 radiation 40.0 720 < th dose dependent rect. 1 16
965 67.47 wind 3.0 90 < th dose dependent rect. 4 1
968 67.48 temperature 10.0 43200 < th dose independent rect. 1 2
969 67.48 temperature 10.0 43200 < th dose independent rect. 1 6
980 67.48 radiation 30.0 720 < th dose independent rect. 10 14
986 67.48 radiation 30.0 720 < th dose dependent sin 4 NA