Os01g0353900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0353900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.81 | 0.332 | 9.2 | -1.54 | 0.63 | 0.353 | 0.394 | -4.16 | -0.302 | 21.2 | 25.6 | 5082 | -- | -- |
| 54.17 | 0.345 | 9.08 | -0.59 | 0.665 | 0.3 | 0.322 | -- | -0.128 | 21.5 | 8.99 | 24500 | -- | -- |
| 50.13 | 0.33 | 9.19 | -1.53 | 0.65 | 0.407 | -- | -4.42 | -0.262 | 21.1 | 26.4 | 4559 | -- | -- |
| 54.54 | 0.346 | 9.08 | -0.598 | 0.663 | 0.277 | -- | -- | -0.126 | 21.4 | 14.85 | 7990 | -- | -- |
| 72.4 | 0.396 | 9.2 | -1.72 | -- | 0.6 | -- | -5.43 | -0.329 | -- | 25.97 | 3448 | -- | -- |
| 55.02 | 0.348 | 9.07 | -0.534 | 0.644 | -- | 0.289 | -- | -0.0867 | 21 | -- | -- | -- | -- |
| 55.3 | 0.348 | 9.07 | -0.544 | 0.644 | -- | -- | -- | -0.0866 | 21 | -- | -- | -- | -- |
| 77.7 | 0.411 | 9.07 | -0.686 | -- | 0.291 | -- | -- | -0.161 | -- | 0.4261 | 6546 | -- | -- |
| 56.81 | 0.351 | 9.02 | -- | 0.644 | -0.356 | -- | -- | 0.123 | 21 | 25.32 | 47520 | -- | -- |
| 79.11 | 0.416 | 9.05 | -0.543 | -- | -- | -- | -- | -0.0908 | -- | -- | -- | -- | -- |
| 63.09 | 0.372 | 9.06 | -- | 0.645 | -- | -- | -- | -0.026 | 20.9 | -- | -- | -- | -- |
| 81.11 | 0.419 | 9.01 | -- | -- | -0.349 | -- | -- | 0.105 | -- | 24.1 | 47520 | -- | -- |
| 86.89 | 0.435 | 9.04 | -- | -- | -- | -- | -- | -0.0305 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.46 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 3 | 47.59 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 18 | 48.89 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 19 | 48.91 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 16 |
| 25 | 49.03 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 26 | 49.03 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 31 | 49.06 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 16 | 17 |
| 37 | 49.12 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 11 | NA |
| 38 | 49.12 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 44 | 49.18 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 51 | 49.19 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 92 | 49.36 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 99 | 49.37 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 15 | 18 |
| 102 | 49.37 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 118 | 49.42 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 119 | 49.43 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 125 | 49.44 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 128 | 49.44 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 138 | 49.44 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 150 | 49.45 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 153 | 49.46 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 154 | 49.46 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 156 | 49.46 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 157 | 49.47 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 164 | 49.48 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 167 | 49.49 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 169 | 49.49 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 175 | 49.50 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 179 | 49.51 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 183 | 49.52 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 230 | 49.61 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 244 | 49.63 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 251 | 49.64 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 265 | 49.66 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 4 |
| 281 | 49.69 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 309 | 49.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 313 | 49.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 315 | 49.74 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 341 | 49.80 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 342 | 49.80 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 344 | 49.80 | radiation | 10.0 | 720 | < th | dose independent | rect. | 15 | 4 |
| 347 | 49.80 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 351 | 49.80 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 374 | 49.83 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 415 | 49.90 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 464 | 49.96 | wind | 1.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 467 | 49.96 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 468 | 49.96 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 11 |
| 471 | 49.96 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 5 |
| 481 | 49.98 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 502 | 50.00 | wind | 1.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 503 | 50.00 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 505 | 50.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 508 | 50.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 531 | 50.02 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 20 | 20 |
| 539 | 50.03 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 542 | 50.03 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 7 | 9 |
| 611 | 50.07 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 11 |
| 619 | 50.07 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 637 | 50.10 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 9 |
| 646 | 50.11 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 651 | 50.11 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 19 |
| 659 | 50.12 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 8 |
| 679 | 50.13 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 695 | 50.14 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 703 | 50.15 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 714 | 50.17 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 726 | 50.19 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 22 |
| 733 | 50.20 | humidity | 90.0 | 30 | < th | dose independent | rect. | 2 | 7 |
| 758 | 50.21 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 786 | 50.22 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 3 | 6 |
| 791 | 50.23 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 795 | 50.24 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 802 | 50.24 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 833 | 50.24 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 839 | 50.24 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 865 | 50.24 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 8 | 8 |
| 866 | 50.25 | radiation | 20.0 | 43200 | > th | dose independent | sin | 21 | NA |
| 870 | 50.25 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 874 | 50.25 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 906 | 50.26 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 16 | 22 |
| 911 | 50.26 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 22 |
| 915 | 50.27 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 927 | 50.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 934 | 50.28 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 938 | 50.28 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 19 |
| 940 | 50.28 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 12 | 4 |
| 944 | 50.29 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 972 | 50.29 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 975 | 50.29 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 977 | 50.29 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 12 | 9 |