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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0352100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 2OG-Fe(II) oxygenase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.26 (0.0534) R2 : 0.843
β1 : 1.44 (0.199) R2dD : 0.0229 R2D : -0.00419
β2 : 5.65 (0.125) R2dC : 0.712 R2C : 0.695
β3 : -1.3 (0.175) R2dE : 0.0239 R2E : 0.00135
β4 : 2.61 (0.531) R2dD*C : 0.00839 R2D*C : -0.0212
β5 : -9.17 (0.579) R2dD*E : 0.103 R2D*E : 0.0426
γ1 : 0.217 (0.114) R2dN8 : 0.00198 R2N8 : -0.028
σ : 0.926
deviance : 388.52
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C
peak time of C : 8.12
E
wheather : radiation
threshold : 12.79
memory length : 4223
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.3
open length of G : 15.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
388.52 0.926 6.26 1.44 5.65 -1.3 2.61 -9.17 0.217 8.12 12.79 4223 16.3 15.8
525.23 1.07 6.49 1.87 5.45 -1.75 2.68 -- -0.042 8.42 29.89 2140 16.6 17.4
405.96 0.938 6.23 1.5 5.7 -1.43 -- -9.26 0.272 8.08 14.4 4211 16.3 15.6
535.87 1.08 6.53 1.82 5.43 -1.88 -- -- -0.0119 8.43 30 2106 16.6 17.7
1718.97 1.93 6.7 1.93 -- -5.9 -- -7.79 -0.201 -- 0.0003428 2413 17.7 19
633.47 1.18 6.51 1.52 5.64 -- 2.75 -- 0.0416 8.24 -- -- -- --
656.73 1.2 6.51 1.6 5.64 -- -- -- 0.0398 8.23 -- -- -- --
1113.67 1.55 6.4 2.41 -- -6.02 -- -- 1.29 -- 0.036 904 21 20.2
618.07 1.16 6.54 -- 5.38 -1.96 -- -- -0.103 8.39 31.65 2157 16.7 17.8
2410.73 2.29 6.66 1.65 -- -- -- -- 0.104 -- -- -- -- --
724.54 1.26 6.55 -- 5.64 -- -- -- -0.139 8.21 -- -- -- --
872.37 1.38 6.72 -- -- -6.16 -- -- 0.514 -- -8.482 696 10.7 14.5
2482.15 2.33 6.7 -- -- -- -- -- -0.0787 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 384.24 radiation 40 14400 < th dose dependent rect. 18 7
3 384.67 radiation 40 14400 < th dose dependent rect. 18 9
4 385.04 radiation 20 14400 < th dose dependent rect. 18 11
6 385.07 wind 7 43200 < th dose dependent rect. 3 8
15 385.70 wind 3 43200 > th dose dependent rect. 5 3
16 385.83 wind 3 43200 > th dose dependent rect. 5 1
27 386.66 radiation 10 14400 < th dose dependent rect. 18 1
35 387.30 wind 1 43200 > th dose dependent rect. 3 8
38 387.38 radiation 10 14400 < th dose dependent rect. 18 5
40 387.45 wind 7 43200 < th dose dependent rect. 8 1
46 387.72 wind 3 43200 > th dose independent rect. 4 1
64 388.73 wind 5 43200 < th dose independent rect. 5 2
71 389.05 wind 9 43200 < th dose dependent rect. 3 4
80 389.25 wind 3 43200 > th dose independent rect. 3 8
95 389.94 wind 3 43200 > th dose independent rect. 3 6
99 390.20 wind 3 43200 < th dose independent rect. 3 2
157 392.18 wind 3 43200 > th dose independent rect. 7 2
160 392.22 wind 3 43200 < th dose independent rect. 3 6
162 392.31 wind 5 43200 < th dose dependent rect. 3 2
169 392.49 wind 3 43200 < th dose independent rect. 3 8
179 393.05 wind 9 43200 < th dose dependent rect. 3 1
230 394.60 wind 3 43200 > th dose independent rect. 7 4
276 396.00 humidity 90 14400 > th dose dependent rect. 6 1
317 397.88 humidity 90 14400 < th dose independent rect. 23 20
326 398.24 humidity 90 14400 < th dose independent rect. 10 21
335 398.40 wind 3 43200 > th dose dependent sin 7 NA
343 398.73 radiation 10 4320 > th dose dependent rect. 16 16
352 398.90 radiation 30 14400 < th dose independent rect. 7 1
361 399.22 wind 3 43200 < th dose independent rect. 7 4
395 400.11 radiation 1 14400 > th dose independent rect. 4 2
406 400.12 radiation 1 14400 < th dose independent rect. 22 8
419 400.18 radiation 1 14400 < th dose independent rect. 4 2
426 400.25 radiation 1 14400 < th dose independent rect. 24 6
431 400.30 radiation 1 14400 < th dose independent rect. 24 8
432 400.32 radiation 1 14400 < th dose independent rect. 4 4
438 400.39 radiation 1 14400 < th dose independent rect. 2 4
441 400.40 radiation 1 14400 < th dose independent rect. 2 6
451 400.50 wind 5 43200 > th dose independent rect. 9 1
474 401.00 wind 5 43200 < th dose independent rect. 9 1
477 401.05 radiation 20 4320 < th dose independent rect. 17 15
485 401.27 radiation 30 14400 < th dose independent rect. 22 10
486 401.29 radiation 30 14400 < th dose independent rect. 24 8
496 401.49 humidity 90 14400 < th dose independent rect. 10 18
539 402.04 radiation 30 14400 < th dose independent rect. 4 4
568 402.38 radiation 30 14400 < th dose independent rect. 2 6
699 403.69 radiation 1 14400 > th dose independent sin 9 NA
702 403.78 radiation 10 4320 > th dose dependent rect. 5 3
799 404.72 radiation 1 14400 < th dose independent sin 8 NA
835 405.11 wind 9 43200 < th dose dependent sin 7 NA
844 405.23 humidity 80 14400 > th dose dependent rect. 17 16
857 405.46 temperature 30 1440 < th dose dependent rect. 7 2
881 405.59 temperature 15 1440 > th dose dependent rect. 7 2
937 406.47 humidity 90 14400 < th dose independent rect. 5 23
939 406.53 humidity 90 14400 < th dose independent no NA NA
966 406.86 wind 5 43200 < th dose independent sin 6 NA