Os01g0351800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os01g0351800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.56 | 0.605 | 4.56 | -2.05 | 1.09 | 1.64 | -0.769 | -1.07 | -0.14 | 1.92 | 0.48 | 1422 | -- | -- |
| 166.15 | 0.6 | 4.56 | -2.15 | 1.11 | 1.85 | -0.724 | -- | -0.148 | 1.91 | 0.4696 | 1419 | -- | -- |
| 167.68 | 0.603 | 4.55 | -2.04 | 1.07 | 1.69 | -- | -0.886 | -0.132 | 2.01 | 0.46 | 1429 | -- | -- |
| 168.07 | 0.604 | 4.57 | -2.13 | 1.12 | 1.89 | -- | -- | -0.143 | 1.84 | 0.47 | 1416 | -- | -- |
| 167.71 | 0.603 | 4.55 | -2.03 | -- | 2.19 | -- | -1.9 | -0.148 | -- | 0.45 | 1742 | -- | -- |
| 202.83 | 0.668 | 4.63 | -2.59 | 1.04 | -- | -0.911 | -- | -0.397 | 2.02 | -- | -- | -- | -- |
| 205.99 | 0.672 | 4.62 | -2.56 | 1.04 | -- | -- | -- | -0.392 | 2.05 | -- | -- | -- | -- |
| 172.37 | 0.611 | 4.56 | -2.14 | -- | 2.43 | -- | -- | -0.146 | -- | 0.4525 | 1692 | -- | -- |
| 265.41 | 0.759 | 4.47 | -- | 1.19 | 2.59 | -- | -- | 0.128 | 1.82 | 0.02612 | 1418 | -- | -- |
| 270.39 | 0.768 | 4.61 | -2.52 | -- | -- | -- | -- | -0.367 | -- | -- | -- | -- | -- |
| 379.29 | 0.911 | 4.56 | -- | 0.988 | -- | -- | -- | -0.106 | 1.99 | -- | -- | -- | -- |
| 271.72 | 0.768 | 4.48 | -- | -- | 3.04 | -- | -- | 0.165 | -- | 0.000182 | 1622 | -- | -- |
| 438.05 | 0.977 | 4.55 | -- | -- | -- | -- | -- | -0.0874 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 2 | 152.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 3 | 152.85 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 7 | 154.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 40 | 156.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 43 | 156.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 49 | 156.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 56 | 157.11 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 59 | 157.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 63 | 157.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 78 | 157.34 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 88 | 157.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 89 | 157.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 110 | 157.60 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 233 | 158.77 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 247 | 159.13 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 266 | 159.33 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 328 | 159.93 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 376 | 160.91 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 480 | 163.76 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 520 | 165.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 521 | 165.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 528 | 165.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 13 |
| 584 | 165.97 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 648 | 167.00 | radiation | 10 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 650 | 167.05 | radiation | 10 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 651 | 167.07 | radiation | 10 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 657 | 167.16 | radiation | 10 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 659 | 167.19 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 669 | 167.19 | radiation | 1 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 687 | 167.26 | radiation | 1 | 14400 | < th | dose independent | rect. | 21 | 8 |
| 690 | 167.28 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 10 |
| 694 | 167.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 700 | 167.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 820 | 168.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 821 | 168.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 858 | 168.09 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 887 | 168.23 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 888 | 168.28 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 934 | 168.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 940 | 168.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 941 | 168.36 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 945 | 168.44 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 961 | 168.68 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 963 | 168.74 | humidity | 70 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 970 | 168.83 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 991 | 169.09 | humidity | 70 | 14400 | < th | dose dependent | rect. | 20 | 13 |