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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0349000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.44 (0.0314) R2 : 0.574
β1 : 1.84 (0.115) R2dD : 0.25 R2D : 0.2
β2 : 1.32 (0.0745) R2dC : 0.294 R2C : 0.291
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.536 (0.0669) R2dN8 : 0.0804 R2N8 : 0.0185
σ : 0.59
deviance : 158.58
__
_____
C
peak time of C : 0.631
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.52 0.557 4.35 1.76 1.38 1.1 0.975 -0.13 0.939 0.613 79 3982 -- --
140.53 0.552 4.35 1.75 1.39 1.1 0.984 -- 0.93 0.6 79 3946 -- --
144.36 0.56 4.36 1.77 1.39 1.11 -- -0.56 0.937 0.389 79.03 3761 -- --
144.66 0.56 4.36 1.71 1.38 1.07 -- -- 0.919 0.541 79.01 3982 -- --
183.68 0.635 4.39 1.79 -- 1.08 -- 1.05 0.656 -- 73 4527 -- --
154.85 0.583 4.44 1.88 1.32 -- 0.941 -- 0.541 0.705 -- -- -- --
158.58 0.59 4.44 1.84 1.32 -- -- -- 0.536 0.631 -- -- -- --
188.01 0.641 4.4 1.83 -- 1.12 -- -- 0.668 -- 73 4527 -- --
214.65 0.682 4.38 -- 1.33 1.51 -- -- 0.822 0.528 86.06 2998 -- --
267.86 0.765 4.42 1.89 -- -- -- -- 0.559 -- -- -- -- --
248.11 0.737 4.49 -- 1.35 -- -- -- 0.331 0.696 -- -- -- --
276.23 0.777 4.44 -- -- 1.16 -- -- 0.469 -- 73 4527 -- --
362.06 0.888 4.47 -- -- -- -- -- 0.35 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 130.29 atmosphere 1000 90 < th dose dependent rect. 12 3
2 130.94 humidity 50 90 < th dose independent rect. 12 3
7 131.92 humidity 50 90 < th dose dependent rect. 13 2
11 132.05 atmosphere 1000 90 < th dose independent rect. 12 1
52 138.62 atmosphere 995 270 > th dose dependent rect. 14 16
54 138.73 humidity 60 43200 > th dose independent rect. 9 3
55 138.80 humidity 60 43200 < th dose dependent rect. 14 2
60 139.11 humidity 60 43200 < th dose independent rect. 15 21
65 139.42 humidity 60 43200 > th dose independent rect. 16 20
72 139.52 temperature 30 10 < th dose dependent rect. 4 16
74 139.56 humidity 90 4320 > th dose dependent rect. 6 3
79 139.78 humidity 80 14400 > th dose independent rect. 12 12
81 139.82 temperature 10 270 > th dose dependent rect. 17 22
84 139.84 humidity 70 43200 < th dose dependent rect. 9 1
88 139.88 humidity 60 43200 < th dose independent rect. 8 5
91 139.89 atmosphere 1015 90 < th dose dependent rect. 20 15
96 139.94 humidity 80 14400 > th dose independent rect. 10 14
101 139.96 temperature 30 10 > th dose dependent rect. 12 2
104 139.98 temperature 15 270 > th dose dependent rect. 19 18
105 139.99 temperature 20 4320 < th dose independent rect. 21 2
107 140.01 temperature 20 4320 > th dose independent rect. 20 3
127 140.19 wind 5 43200 < th dose independent rect. 23 1
129 140.22 humidity 80 14400 > th dose dependent rect. 18 10
132 140.24 humidity 80 4320 < th dose independent rect. 21 2
142 140.29 humidity 60 43200 < th dose independent sin 6 NA
144 140.29 radiation 10 43200 > th dose independent rect. 17 1
163 140.30 atmosphere 995 10 > th dose dependent rect. 16 15
164 140.31 wind 5 43200 > th dose independent rect. 23 1
190 140.43 humidity 80 4320 > th dose independent rect. 21 2
202 140.48 humidity 80 14400 > th dose independent sin 18 NA
211 140.53 humidity 60 43200 < th dose independent rect. 22 15
215 140.54 humidity 60 43200 > th dose independent rect. 22 14
224 140.56 atmosphere 1015 30 < th dose dependent rect. 20 17
236 140.59 humidity 80 14400 > th dose dependent sin 12 NA
262 140.68 humidity 80 14400 < th dose independent rect. 12 11
295 140.75 humidity 50 43200 > th dose independent rect. 15 1
301 140.75 atmosphere 1000 10 > th dose dependent rect. 24 9
321 140.77 atmosphere 995 10 > th dose dependent rect. 16 17
333 140.79 humidity 80 4320 < th dose independent rect. 10 15
336 140.79 radiation 1 270 > th dose independent rect. 17 22
337 140.79 temperature 30 10 < th dose dependent rect. 4 9
346 140.81 humidity 80 14400 > th dose independent rect. 14 5
347 140.81 wind 3 43200 < th dose dependent rect. 4 1
374 140.85 humidity 60 43200 < th dose dependent sin 18 NA
382 140.86 wind 5 1440 < th dose independent rect. 13 14
408 140.91 humidity 80 14400 < th dose independent rect. 14 4
422 140.93 radiation 20 4320 > th dose independent rect. 7 1
470 140.97 humidity 60 43200 > th dose independent sin 7 NA
484 140.97 temperature 15 10 > th dose dependent rect. 20 19
486 140.98 wind 5 1440 < th dose independent rect. 17 2
544 141.07 humidity 80 43200 > th dose independent rect. 17 3
561 141.08 humidity 80 14400 > th dose dependent rect. 18 21
562 141.09 humidity 80 14400 > th dose independent rect. 15 1
602 141.13 wind 5 1440 > th dose independent rect. 13 14
618 141.15 humidity 80 43200 < th dose independent rect. 17 3
726 141.27 humidity 50 43200 > th dose independent rect. 14 3
777 141.32 humidity 60 43200 > th dose independent sin 11 NA
778 141.32 humidity 80 14400 < th dose independent sin 18 NA
793 141.33 humidity 70 43200 < th dose dependent rect. 17 19
797 141.34 humidity 90 14400 < th dose independent rect. 6 1
854 141.38 humidity 80 14400 > th dose independent rect. 10 1
857 141.38 humidity 80 14400 > th dose dependent no NA NA
859 141.38 atmosphere 995 270 > th dose dependent rect. 23 9
865 141.39 humidity 80 14400 > th dose independent rect. 10 9
875 141.39 humidity 80 14400 > th dose dependent rect. 21 23
945 141.44 humidity 80 14400 > th dose dependent rect. 3 23
960 141.45 humidity 80 270 > th dose dependent rect. 23 20