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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0348800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Salt-stress induced protein (Salt protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0114) R2 : 0.00901
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.049 (0.0241) R2dN8 : 0.0116 R2N8 : 0.00901
σ : 0.215
deviance : 21.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
19.31 0.205 3.15 -0.237 0.13 -0.839 0.0599 3.8 -0.0331 9.08 1000 10 -- --
19.51 0.207 3.1 0.0162 0.126 -0.168 0.0452 -- -0.0333 8.96 1000 10 -- --
19.32 0.206 3.15 -0.232 0.13 -0.83 -- 3.74 -0.0331 8.96 1000 10 -- --
19.52 0.207 3.1 0.0175 0.127 -0.169 -- -- -0.0333 8.88 1000 10 -- --
20.25 0.21 3.15 -0.216 -- -0.804 -- 3.56 -0.0322 -- 999.7 18 -- --
20.29 0.211 3.1 0.046 0.127 -- 0.0554 -- -0.0445 9.11 -- -- -- --
20.3 0.211 3.1 0.0478 0.127 -- -- -- -0.0445 9 -- -- -- --
20.43 0.211 3.11 0.0175 -- -0.173 -- -- -0.0325 -- 999.7 18 -- --
19.53 0.207 3.1 -- 0.127 -0.172 -- -- -0.035 8.86 1000 15 -- --
21.23 0.215 3.11 0.0476 -- -- -- -- -0.0437 -- -- -- -- --
20.36 0.211 3.11 -- 0.128 -- -- -- -0.0499 8.97 -- -- -- --
20.43 0.211 3.11 -- -- -0.177 -- -- -0.034 -- 999.7 19 -- --
21.29 0.215 3.11 -- -- -- -- -- -0.049 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.82 atmosphere 1000.0 30 > th dose independent rect. 23 23
3 18.88 atmosphere 995.0 720 > th dose independent rect. 23 16
4 18.95 atmosphere 1000.0 10 < th dose independent rect. 7 20
5 18.97 atmosphere 1000.0 720 > th dose independent rect. 3 8
9 18.98 atmosphere 1000.0 720 > th dose independent rect. 21 14
14 19.02 atmosphere 1000.0 90 > th dose independent rect. 3 23
31 19.13 radiation 10.0 4320 < th dose dependent rect. 23 1
32 19.14 atmosphere 1000.0 720 > th dose independent rect. 23 10
40 19.17 atmosphere 1000.0 10 > th dose independent rect. 4 16
45 19.19 radiation 40.0 43200 < th dose dependent rect. 23 1
46 19.20 wind 9.0 720 < th dose independent rect. 3 8
49 19.21 wind 9.0 1440 < th dose independent rect. 23 1
50 19.21 temperature 10.0 1440 > th dose independent rect. 23 1
53 19.21 temperature 30.0 1440 < th dose independent rect. 23 1
57 19.21 humidity 50.0 1440 > th dose independent rect. 23 1
67 19.21 atmosphere 995.0 1440 > th dose independent rect. 23 1
68 19.21 radiation 1.0 1440 < th dose independent rect. 23 1
92 19.21 temperature 10.0 1440 > th dose independent rect. 24 23
102 19.22 temperature 25.0 30 > th dose independent rect. 22 1
103 19.22 humidity 80.0 30 > th dose independent rect. 22 1
104 19.22 humidity 90.0 90 < th dose independent rect. 2 2
105 19.22 temperature 25.0 30 > th dose independent rect. 20 4
106 19.22 atmosphere 995.0 720 > th dose independent rect. 7 8
108 19.22 atmosphere 1000.0 30 > th dose independent rect. 23 21
111 19.22 atmosphere 1000.0 10 < th dose dependent rect. 7 20
117 19.23 atmosphere 1000.0 10 > th dose independent rect. 21 23
122 19.23 atmosphere 1005.0 30 > th dose dependent rect. 22 1
123 19.23 temperature 25.0 720 > th dose dependent rect. 24 9
125 19.24 wind 3.0 30 < th dose independent rect. 22 1
134 19.25 humidity 90.0 10 < th dose independent rect. 3 1
136 19.25 atmosphere 1005.0 30 > th dose independent rect. 22 1
144 19.25 temperature 20.0 30 > th dose dependent rect. 22 1
145 19.25 humidity 80.0 90 < th dose dependent rect. 2 1
146 19.25 humidity 90.0 10 < th dose dependent rect. 3 1
148 19.25 atmosphere 995.0 30 > th dose dependent rect. 22 1
152 19.25 temperature 25.0 720 > th dose dependent rect. 2 7
160 19.26 precipitation 0.1 720 < th dose independent rect. 15 8
165 19.26 wind 5.0 30 < th dose dependent rect. 22 1
167 19.26 temperature 10.0 30 > th dose dependent rect. 22 1
169 19.26 humidity 70.0 30 > th dose dependent rect. 22 1
170 19.26 temperature 25.0 720 > th dose dependent rect. 6 2
174 19.26 temperature 25.0 720 > th dose dependent rect. 4 4
177 19.26 precipitation 0.1 720 < th dose dependent rect. 15 8
179 19.27 wind 1.0 30 > th dose independent rect. 22 1
183 19.27 temperature 10.0 30 > th dose independent rect. 22 1
185 19.27 temperature 30.0 30 < th dose independent rect. 22 1
186 19.27 humidity 50.0 30 > th dose independent rect. 22 1
189 19.27 humidity 90.0 30 < th dose independent rect. 22 1
191 19.27 atmosphere 1010.0 30 < th dose independent rect. 22 1
193 19.27 radiation 1.0 30 < th dose independent rect. 22 1
198 19.27 precipitation 0.1 30 < th dose independent rect. 22 1
201 19.27 temperature 10.0 30 > th dose independent rect. 23 23
204 19.27 humidity 50.0 30 > th dose dependent rect. 22 1
208 19.27 radiation 1.0 30 < th dose dependent rect. 22 1
214 19.27 precipitation 0.1 30 < th dose dependent rect. 22 1
221 19.28 atmosphere 1015.0 720 < th dose independent rect. 3 8
223 19.28 precipitation 0.1 720 < th dose independent rect. 11 16
225 19.28 atmosphere 1000.0 10 < th dose independent rect. 20 23
228 19.28 atmosphere 1005.0 10 > th dose dependent rect. 2 2
235 19.28 precipitation 0.1 720 < th dose dependent rect. 11 16
245 19.29 atmosphere 1000.0 10 < th dose independent rect. 22 20
252 19.29 wind 9.0 14400 > th dose dependent rect. 13 1
259 19.30 wind 9.0 720 < th dose independent rect. 15 8
260 19.30 temperature 10.0 720 > th dose independent rect. 3 8
262 19.30 temperature 10.0 720 > th dose independent rect. 11 16
267 19.30 atmosphere 1000.0 10 < th dose independent rect. 13 22
270 19.30 atmosphere 1000.0 10 < th dose independent rect. 1 23
276 19.30 atmosphere 1000.0 10 < th dose independent rect. 23 23
277 19.30 temperature 25.0 90 > th dose dependent rect. 20 3
279 19.31 atmosphere 1000.0 10 > th dose independent no NA NA
281 19.31 atmosphere 1000.0 10 < th dose independent no NA NA
285 19.31 atmosphere 1010.0 10 < th dose independent rect. 4 16
295 19.31 atmosphere 1000.0 10 < th dose independent rect. 15 23
296 19.31 atmosphere 1000.0 10 < th dose independent rect. 17 23
320 19.32 atmosphere 1000.0 10 < th dose independent rect. 9 23
327 19.32 atmosphere 1015.0 30 < th dose dependent rect. 22 1
330 19.33 wind 7.0 90 < th dose independent rect. 4 15
334 19.33 atmosphere 1000.0 90 > th dose independent rect. 13 22
341 19.33 wind 1.0 30 > th dose dependent rect. 22 1
345 19.33 humidity 80.0 14400 < th dose dependent rect. 24 9
352 19.34 temperature 10.0 720 > th dose independent rect. 15 8
353 19.34 humidity 50.0 720 > th dose independent rect. 3 8
354 19.34 atmosphere 995.0 720 > th dose independent rect. 11 10
355 19.34 temperature 10.0 720 > th dose independent rect. 23 16
364 19.34 atmosphere 1000.0 270 > th dose independent rect. 20 23
369 19.34 temperature 30.0 30 < th dose dependent rect. 22 1
374 19.35 radiation 10.0 720 > th dose independent rect. 8 1
387 19.35 humidity 90.0 30 < th dose dependent rect. 22 1
392 19.36 atmosphere 995.0 720 > th dose independent rect. 9 14
416 19.37 temperature 30.0 1440 > th dose independent rect. 14 21
427 19.37 temperature 25.0 10 > th dose dependent rect. 21 3
432 19.38 atmosphere 1000.0 1440 < th dose independent rect. 21 2
433 19.38 atmosphere 1000.0 10 < th dose independent rect. 24 2
437 19.38 atmosphere 1000.0 10 < th dose independent rect. 13 14
444 19.38 temperature 30.0 1440 < th dose independent rect. 14 21
463 19.39 atmosphere 1000.0 90 < th dose independent rect. 24 1
474 19.39 atmosphere 1000.0 90 > th dose independent rect. 9 23
479 19.39 wind 5.0 14400 < th dose dependent rect. 10 2
482 19.39 radiation 40.0 10 < th dose dependent rect. 4 7
508 19.40 atmosphere 1000.0 10 > th dose independent rect. 10 23
511 19.40 wind 3.0 14400 > th dose dependent rect. 11 1
514 19.40 atmosphere 1000.0 10 < th dose dependent rect. 1 1
519 19.40 wind 1.0 14400 < th dose dependent rect. 6 2
531 19.41 humidity 80.0 4320 > th dose independent rect. 6 5
532 19.41 radiation 30.0 10 < th dose independent rect. 4 7
541 19.41 radiation 10.0 270 > th dose independent rect. 14 19
543 19.41 atmosphere 1000.0 10 > th dose independent rect. 14 21
552 19.41 atmosphere 1000.0 10 > th dose independent rect. 12 23
559 19.41 atmosphere 1000.0 10 < th dose dependent rect. 1 18
589 19.42 wind 9.0 30 < th dose dependent rect. 4 16
601 19.43 atmosphere 1010.0 10 < th dose independent rect. 8 12
617 19.43 wind 9.0 30 < th dose independent rect. 23 23
636 19.44 wind 5.0 14400 < th dose independent rect. 11 1
642 19.44 wind 5.0 10 < th dose independent rect. 20 8
643 19.44 temperature 30.0 4320 < th dose independent rect. 23 11
644 19.44 atmosphere 1000.0 90 > th dose independent rect. 23 12
645 19.44 temperature 30.0 4320 < th dose independent rect. 21 13
674 19.44 temperature 30.0 1440 > th dose dependent rect. 14 2
678 19.44 temperature 10.0 90 > th dose dependent rect. 3 16
686 19.44 atmosphere 1000.0 10 < th dose dependent rect. 21 22
697 19.45 atmosphere 1000.0 1440 > th dose independent rect. 1 1
707 19.45 temperature 25.0 720 > th dose independent rect. 3 6
709 19.45 temperature 30.0 4320 < th dose independent rect. 3 7
755 19.45 temperature 10.0 10 > th dose dependent rect. 4 16
758 19.45 atmosphere 1000.0 10 < th dose dependent rect. 13 22
760 19.46 humidity 70.0 4320 > th dose independent rect. 21 1
762 19.46 humidity 80.0 4320 < th dose independent rect. 6 5
764 19.46 atmosphere 1000.0 10 < th dose independent rect. 7 11
769 19.46 wind 9.0 720 < th dose independent rect. 15 16
770 19.46 atmosphere 1000.0 270 > th dose independent rect. 14 16
807 19.46 atmosphere 1000.0 10 < th dose dependent rect. 24 22
808 19.46 radiation 20.0 10 < th dose dependent rect. 3 23
811 19.47 temperature 30.0 1440 > th dose independent rect. 10 1
813 19.47 atmosphere 1000.0 720 < th dose independent rect. 7 1
822 19.47 precipitation 0.1 720 < th dose independent rect. 3 8
831 19.47 atmosphere 1000.0 10 > th dose independent rect. 14 16
860 19.47 atmosphere 1000.0 10 > th dose independent rect. 8 23
864 19.47 wind 1.0 14400 < th dose dependent rect. 2 1
866 19.47 humidity 90.0 4320 < th dose dependent rect. 7 1
868 19.47 wind 7.0 10 < th dose dependent rect. 20 8
870 19.47 precipitation 0.1 720 < th dose dependent rect. 3 8
894 19.48 temperature 30.0 4320 < th dose independent rect. 9 1
905 19.48 atmosphere 1015.0 10 < th dose independent rect. 20 8
938 19.48 atmosphere 1000.0 720 < th dose dependent rect. 6 1
939 19.48 humidity 90.0 4320 < th dose dependent rect. 6 3
940 19.48 atmosphere 1000.0 720 < th dose dependent rect. 6 3
943 19.48 atmosphere 1000.0 10 < th dose dependent rect. 7 12
963 19.49 wind 1.0 14400 > th dose independent rect. 1 2
964 19.49 wind 1.0 43200 > th dose independent rect. 9 2
966 19.49 temperature 30.0 1440 > th dose independent rect. 15 2
968 19.49 temperature 30.0 1440 < th dose independent rect. 15 2
976 19.49 atmosphere 1000.0 10 > th dose independent rect. 8 12
980 19.49 atmosphere 1000.0 90 > th dose independent rect. 16 14
984 19.49 atmosphere 1000.0 10 < th dose independent rect. 7 15
985 19.49 humidity 50.0 720 > th dose independent rect. 23 16