Os01g0348700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L23a (L25).
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Os01g0348700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L23a (L25).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.83 | 0.512 | 11.5 | 0.556 | 0.624 | -0.993 | 0.86 | 0.0415 | 0.161 | 19.2 | 19.83 | 2866 | -- | -- |
| 118.84 | 0.508 | 11.5 | 0.562 | 0.623 | -1 | 0.858 | -- | 0.162 | 19.2 | 19.8 | 2865 | -- | -- |
| 120.76 | 0.512 | 11.5 | 0.538 | 0.632 | -0.993 | -- | 0.0846 | 0.161 | 19 | 19.9 | 2865 | -- | -- |
| 120.77 | 0.512 | 11.5 | 0.541 | 0.63 | -1.01 | -- | -- | 0.163 | 19 | 19.8 | 2865 | -- | -- |
| 141.25 | 0.554 | 11.5 | 0.467 | -- | -0.972 | -- | 0.128 | 0.124 | -- | 20.2 | 3676 | -- | -- |
| 137.41 | 0.55 | 11.5 | 1.1 | 0.602 | -- | 0.983 | -- | 0.407 | 19.3 | -- | -- | -- | -- |
| 140 | 0.554 | 11.5 | 1.08 | 0.605 | -- | -- | -- | 0.409 | 19.2 | -- | -- | -- | -- |
| 140.87 | 0.553 | 11.5 | 0.64 | -- | -0.914 | -- | -- | 0.174 | -- | 20.5 | 2135 | -- | -- |
| 125.55 | 0.522 | 11.6 | -- | 0.595 | -1.22 | -- | -- | 0.0656 | 19 | 19.3 | 14268 | -- | -- |
| 159.4 | 0.59 | 11.5 | 1.07 | -- | -- | -- | -- | 0.399 | -- | -- | -- | -- | -- |
| 170.91 | 0.612 | 11.5 | -- | 0.595 | -- | -- | -- | 0.288 | 19.3 | -- | -- | -- | -- |
| 144.62 | 0.56 | 11.5 | -- | -- | -1.2 | -- | -- | 0.0314 | -- | 19.13 | 15126 | -- | -- |
| 189.71 | 0.643 | 11.5 | -- | -- | -- | -- | -- | 0.28 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 10 | 113.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 18 | 113.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 29 | 114.39 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 33 | 114.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 35 | 114.57 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 45 | 114.73 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 51 | 115.06 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 147 | 116.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 149 | 116.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 154 | 116.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 155 | 116.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 190 | 116.85 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 246 | 117.20 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 263 | 117.36 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 279 | 117.45 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 292 | 117.54 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 295 | 117.56 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 305 | 117.61 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 310 | 117.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 349 | 117.83 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 377 | 117.95 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 411 | 118.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 11 |
| 475 | 118.26 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 479 | 118.27 | wind | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 493 | 118.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 505 | 118.36 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 513 | 118.38 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 4 |
| 554 | 118.49 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 580 | 118.54 | wind | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 601 | 118.59 | wind | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 603 | 118.60 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 605 | 118.60 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 645 | 118.68 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 664 | 118.74 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 706 | 118.86 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 882 | 119.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 905 | 119.30 | humidity | 70 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 924 | 119.33 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 4 |
| 926 | 119.34 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 977 | 119.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 17 |