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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0348300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0192) R2 : 0.000587
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.021 (0.0405) R2dN8 : 0.000757 R2N8 : 0.000587
σ : 0.362
deviance : 60.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.2 0.352 3.16 -0.063 0.0738 -0.351 0.0689 1.56 -0.0341 10.2 1.097 16 -- --
58.21 0.358 3.14 0.00364 0.0815 -0.209 0.137 -- -0.0155 10.2 1.097 16 -- --
56.21 0.349 3.16 -0.0604 0.0741 -0.347 -- 1.57 -0.0342 9.81 1.096 16 -- --
58.25 0.358 3.14 0.0096 0.0876 -0.195 -- -- -0.0161 8.93 1.097 16 -- --
56.54 0.35 3.16 -0.0623 -- -0.351 -- 1.59 -0.0344 -- 1.087 16 -- --
59.41 0.361 3.14 0.0323 0.12 -- -0.142 -- -0.0202 6.53 -- -- -- --
59.44 0.361 3.14 0.0309 0.12 -- -- -- -0.0194 7.09 -- -- -- --
58.68 0.358 3.14 0.0084 -- -0.205 -- -- -0.0154 -- 1.087 16 -- --
58.25 0.357 3.14 -- 0.0875 -0.196 -- -- -0.0171 8.93 1.019 16 -- --
60.21 0.363 3.14 0.0332 -- -- -- -- -0.0173 -- -- -- -- --
59.47 0.361 3.14 -- 0.121 -- -- -- -0.0229 7.07 -- -- -- --
58.69 0.358 3.14 -- -- -0.206 -- -- -0.0163 -- 1.097 16 -- --
60.23 0.362 3.14 -- -- -- -- -- -0.021 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.57 radiation 10.0 43200 < th dose dependent rect. 3 1
3 47.61 radiation 1.0 4320 < th dose dependent rect. 3 1
5 47.63 temperature 20.0 30 > th dose dependent rect. 2 1
7 47.64 temperature 25.0 90 > th dose dependent rect. 1 3
10 47.66 atmosphere 1005.0 30 > th dose dependent rect. 2 1
15 47.68 wind 9.0 1440 < th dose independent rect. 3 1
16 47.68 temperature 10.0 1440 > th dose independent rect. 3 1
19 47.68 temperature 30.0 1440 < th dose independent rect. 3 1
23 47.68 humidity 50.0 1440 > th dose independent rect. 3 1
32 47.68 atmosphere 995.0 1440 > th dose independent rect. 3 1
33 47.68 radiation 1.0 1440 < th dose independent rect. 3 1
53 47.68 temperature 10.0 1440 > th dose independent rect. 4 23
66 47.70 temperature 20.0 30 > th dose independent rect. 2 1
67 47.70 atmosphere 1005.0 30 > th dose independent rect. 2 1
70 47.73 wind 3.0 30 < th dose independent rect. 2 1
73 47.74 wind 3.0 30 < th dose dependent rect. 2 1
79 47.79 atmosphere 1000.0 30 > th dose independent rect. 3 23
81 47.81 temperature 10.0 30 > th dose independent rect. 2 1
83 47.81 temperature 30.0 30 < th dose independent rect. 2 1
84 47.81 humidity 50.0 30 > th dose independent rect. 2 1
89 47.81 atmosphere 1010.0 30 < th dose independent rect. 2 1
91 47.81 radiation 1.0 30 < th dose independent rect. 2 1
96 47.81 precipitation 0.1 30 < th dose independent rect. 2 1
97 47.81 temperature 10.0 30 > th dose independent rect. 3 23
98 47.81 humidity 50.0 30 > th dose dependent rect. 2 1
101 47.81 radiation 1.0 30 < th dose dependent rect. 2 1
106 47.81 precipitation 0.1 30 < th dose dependent rect. 2 1
113 48.00 atmosphere 1015.0 30 < th dose dependent rect. 2 1
116 48.10 temperature 30.0 30 < th dose dependent rect. 2 1
121 48.21 wind 1.0 30 > th dose independent rect. 2 1
144 48.60 precipitation 0.1 30 < th dose independent rect. 3 23
147 48.60 precipitation 0.1 30 < th dose dependent rect. 3 23
181 49.50 wind 9.0 30 < th dose independent rect. 3 23
194 50.55 humidity 50.0 30 > th dose independent rect. 3 23
271 52.77 humidity 90.0 90 < th dose independent rect. 2 1
319 53.75 temperature 30.0 30 < th dose independent rect. 3 23
329 53.95 atmosphere 1015.0 30 < th dose independent rect. 3 23
339 54.22 wind 1.0 10 < th dose independent rect. 13 14
350 54.30 wind 1.0 10 < th dose independent rect. 17 10
353 54.31 wind 1.0 10 < th dose independent rect. 21 6
384 54.55 humidity 90.0 90 < th dose independent rect. 1 4
424 54.74 humidity 60.0 10 > th dose independent rect. 14 12
432 54.76 radiation 30.0 10 < th dose dependent rect. 14 12
454 54.92 radiation 10.0 30 < th dose independent rect. 3 23
456 54.92 radiation 20.0 30 < th dose dependent rect. 3 23
467 55.01 radiation 10.0 10 < th dose independent rect. 14 12
480 55.07 temperature 10.0 30 > th dose dependent rect. 3 23
493 55.14 humidity 90.0 720 < th dose independent rect. 1 3
524 55.26 atmosphere 1000.0 10 > th dose independent rect. 16 10
579 55.36 atmosphere 1000.0 10 > th dose independent rect. 2 14
580 55.37 humidity 90.0 10 > th dose independent rect. 24 3
598 55.43 temperature 10.0 10 > th dose independent rect. 16 10
600 55.43 temperature 10.0 10 > th dose independent rect. 2 14
602 55.43 atmosphere 1015.0 10 < th dose independent rect. 2 14
607 55.44 precipitation 0.1 10 < th dose independent rect. 2 14
609 55.44 precipitation 0.1 10 < th dose dependent rect. 2 14
611 55.46 wind 9.0 10 < th dose independent rect. 16 10
619 55.49 precipitation 0.1 10 < th dose independent rect. 16 10
622 55.49 precipitation 0.1 10 < th dose dependent rect. 16 10
630 55.51 radiation 10.0 10 < th dose independent rect. 12 14
639 55.53 temperature 25.0 1440 < th dose independent rect. 1 1
663 55.58 temperature 10.0 1440 > th dose independent rect. 17 10
666 55.58 radiation 30.0 1440 < th dose independent rect. 17 10
672 55.58 temperature 10.0 1440 > th dose independent rect. 3 14
688 55.62 temperature 30.0 10 < th dose independent rect. 16 10
692 55.64 temperature 30.0 30 < th dose independent rect. 2 14
714 55.66 humidity 50.0 10 > th dose independent rect. 2 14
727 55.67 radiation 10.0 30 < th dose independent rect. 5 21
736 55.69 wind 9.0 10 < th dose independent rect. 2 14
757 55.73 wind 3.0 30 < th dose dependent rect. 11 16
763 55.77 wind 1.0 10 > th dose independent sin 16 NA
768 55.77 wind 1.0 90 > th dose independent rect. 3 23
783 55.81 atmosphere 995.0 720 > th dose independent rect. 23 16
784 55.81 wind 3.0 30 < th dose dependent rect. 13 14
791 55.83 wind 3.0 10 < th dose dependent rect. 22 5
796 55.84 wind 3.0 30 < th dose dependent rect. 15 12
811 55.86 wind 9.0 1440 < th dose independent rect. 3 3
816 55.86 temperature 10.0 1440 > th dose independent rect. 3 3
821 55.86 temperature 30.0 1440 < th dose independent rect. 3 3
832 55.86 humidity 50.0 1440 > th dose independent rect. 3 3
844 55.86 atmosphere 995.0 1440 > th dose independent rect. 3 3
859 55.86 radiation 20.0 1440 < th dose independent rect. 3 3
871 55.86 temperature 10.0 1440 > th dose independent rect. 6 21
879 55.86 radiation 10.0 10 < th dose dependent rect. 6 20
882 55.87 precipitation 0.1 720 < th dose independent rect. 15 8
886 55.87 precipitation 0.1 720 < th dose dependent rect. 15 8
889 55.87 humidity 50.0 30 > th dose dependent rect. 3 23
936 55.98 temperature 10.0 720 > th dose independent rect. 15 8
937 55.98 temperature 10.0 720 > th dose independent rect. 23 16
943 55.99 radiation 1.0 10 < th dose dependent rect. 2 12
945 55.99 radiation 10.0 10 < th dose dependent rect. 8 18
980 56.06 temperature 10.0 720 > th dose independent rect. 3 8
981 56.06 atmosphere 995.0 720 > th dose independent rect. 3 8
983 56.06 temperature 10.0 720 > th dose independent rect. 11 16
992 56.08 radiation 1.0 10 < th dose independent rect. 2 12