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Os01g0347200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.16 (0.029) R2 : 0.593
β1 : 2.43 (0.138) R2dD : 0.555 R2D : -0.173
β2 : 1.28 (0.0656) R2dC : 0.315 R2C : 0.242
β3 : -1.87 (0.128) R2dE : 0.521 R2E : -0.428
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.81 (0.0769) R2dN8 : 0.243 R2N8 : -0.209
σ : 0.496
deviance : 113.62
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C
peak time of C : 2.79
E
wheather : temperature
threshold : -0.1903
memory length : 17358
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.08 0.484 7.11 2.75 1.2 -1.48 0.626 3.99 0.652 2.48 20.16 4663 -- --
112.68 0.494 7.17 2.62 1.21 -2.02 0.524 -- 0.787 2.47 11.06 20817 -- --
107.38 0.483 7.1 2.76 1.21 -1.49 -- 4.11 0.654 2.61 20.28 4603 -- --
113.62 0.496 7.16 2.43 1.28 -1.87 -- -- 0.81 2.79 -0.1903 17358 -- --
133.79 0.542 7.22 1.74 -- -2.32 -- 1.8 0.516 -- 20.28 4603 -- --
169.51 0.61 7.34 0.966 1.18 -- 0.529 -- 0.0436 2.59 -- -- -- --
170.44 0.611 7.34 0.952 1.19 -- -- -- 0.0401 2.7 -- -- -- --
137.08 0.548 7.25 1.43 -- -2.22 -- -- 0.426 -- 20.28 4603 -- --
170.96 0.612 7.32 -- 0.79 -1.48 -- -- 0.11 2.93 -27.53 1504 -- --
252.25 0.742 7.33 1 -- -- -- -- 0.0701 -- -- -- -- --
194.33 0.652 7.36 -- 1.2 -- -- -- -0.0659 2.71 -- -- -- --
188.44 0.639 7.29 -- -- -1.96 -- -- 0.234 -- 19.7 10 -- --
278.76 0.779 7.36 -- -- -- -- -- -0.0411 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 99.05 humidity 90 43200 > th dose dependent rect. 18 3
2 99.15 humidity 90 43200 > th dose independent rect. 18 1
5 99.36 humidity 90 43200 > th dose dependent rect. 7 17
9 99.44 humidity 90 43200 > th dose independent rect. 4 19
10 99.45 humidity 90 43200 > th dose independent rect. 7 16
14 99.51 humidity 90 43200 < th dose independent rect. 10 1
42 99.86 humidity 90 43200 < th dose independent rect. 3 19
49 99.95 humidity 90 43200 < th dose independent rect. 7 16
56 99.98 humidity 90 43200 > th dose dependent sin 20 NA
69 100.14 humidity 90 43200 > th dose independent sin 20 NA
70 100.14 humidity 90 43200 > th dose independent rect. 9 2
71 100.15 humidity 90 43200 > th dose dependent sin 0 NA
82 100.22 humidity 80 43200 > th dose dependent rect. 10 3
83 100.23 humidity 90 43200 > th dose independent sin 1 NA
99 100.29 radiation 1 43200 > th dose independent rect. 17 15
101 100.30 humidity 80 43200 > th dose dependent rect. 10 1
102 100.31 humidity 90 43200 > th dose independent rect. 7 4
103 100.31 humidity 90 43200 > th dose independent rect. 17 4
112 100.36 humidity 90 43200 < th dose independent sin 20 NA
113 100.36 radiation 1 43200 < th dose independent rect. 5 4
117 100.39 radiation 1 43200 > th dose independent rect. 5 4
119 100.40 radiation 1 43200 < th dose independent rect. 2 7
123 100.41 radiation 1 43200 < th dose independent rect. 17 14
128 100.42 humidity 90 43200 < th dose independent rect. 17 4
131 100.42 radiation 1 43200 < th dose independent rect. 21 12
157 100.47 radiation 1 43200 > th dose independent sin 9 NA
171 100.52 radiation 1 43200 < th dose independent sin 9 NA
214 100.60 humidity 90 43200 < th dose independent rect. 18 1
252 100.67 humidity 90 43200 < th dose independent sin 1 NA
261 100.70 radiation 1 43200 > th dose independent rect. 17 1
262 100.70 radiation 1 43200 < th dose independent rect. 17 1
286 100.77 humidity 90 43200 < th dose independent rect. 15 8
322 100.78 radiation 1 43200 < th dose independent rect. 17 19
332 100.79 radiation 1 43200 < th dose independent rect. 17 21
339 100.82 humidity 90 43200 > th dose independent rect. 3 11
409 100.92 humidity 90 43200 > th dose independent rect. 15 8
416 100.94 radiation 1 43200 < th dose dependent rect. 5 2
459 101.03 temperature 25 43200 < th dose independent rect. 14 1
494 101.08 temperature 25 43200 > th dose independent rect. 14 1
497 101.08 humidity 90 43200 > th dose dependent rect. 7 2
542 101.20 radiation 1 43200 < th dose dependent rect. 21 9
562 101.24 radiation 1 43200 > th dose independent rect. 9 3
594 101.33 radiation 1 43200 < th dose independent rect. 9 3
702 101.55 radiation 1 43200 > th dose independent rect. 5 14
721 101.57 radiation 1 43200 < th dose dependent rect. 17 1
731 101.59 radiation 1 43200 < th dose independent rect. 13 22
738 101.60 radiation 1 43200 < th dose dependent rect. 10 2
739 101.60 radiation 1 43200 < th dose dependent rect. 5 7
743 101.62 radiation 1 43200 > th dose independent no NA NA
784 101.62 radiation 1 43200 > th dose independent rect. 10 23
791 101.63 radiation 1 43200 < th dose independent rect. 5 17
796 101.64 radiation 1 43200 < th dose independent rect. 5 14
807 101.64 radiation 1 43200 < th dose dependent rect. 17 14
811 101.66 humidity 80 43200 < th dose independent rect. 12 1
830 101.69 radiation 1 43200 < th dose independent rect. 1 21
831 101.69 radiation 1 43200 < th dose independent rect. 10 23
861 101.71 radiation 1 43200 < th dose independent no NA NA
896 101.74 radiation 1 43200 < th dose independent rect. 17 5
903 101.75 radiation 1 43200 < th dose independent rect. 17 3
962 101.81 temperature 20 43200 > th dose dependent rect. 14 1
973 101.83 radiation 1 43200 < th dose dependent sin 8 NA
975 101.83 temperature 15 43200 > th dose dependent rect. 21 1