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Os01g0346700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0223) R2 : 0.883
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.36 (0.0738) R2dC : 0.456 R2C : 0.758
β3 : -1.01 (0.0608) R2dE : 0.124 R2E : 0.428
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.061 (0.0471) R2dN8 : 0.000568 R2N8 : -0.00193
σ : 0.418
deviance : 80.68
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C
peak time of C : 8.49
E
wheather : temperature
threshold : 20.04
memory length : 150
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.3
open length of G : 9.83

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76 0.41 12.8 0.0641 2.57 -0.847 1.51 1.08 -0.0298 8.58 20.33 87 17.9 9.96
80.04 0.417 12.9 0.0389 2.58 -0.845 1.34 -- -0.044 8.56 20.1 110 17.9 9.83
82.21 0.422 12.8 0.0684 2.6 -0.843 -- 0.776 -0.0296 8.54 20 95 17.9 10
80.64 0.418 12.9 0.0634 2.37 -1.02 -- -- -0.0554 8.47 20.1 149 17.3 9.88
180.39 0.629 12.9 0.168 -- -2.18 -- -0.284 0.148 -- 18.78 33 16.5 11.2
107.6 0.486 12.9 -0.113 3.16 -- 0.874 -- -0.135 9.18 -- -- -- --
110.3 0.492 12.9 -0.0812 3.15 -- -- -- -0.134 9.2 -- -- -- --
109.34 0.487 13 -0.0885 -- -2.65 -- -- -0.159 -- -17.58 310 13.3 11.5
80.68 0.418 12.9 -- 2.36 -1.01 -- -- -0.061 8.49 20.04 150 17.3 9.83
686.79 1.22 12.9 -0.0921 -- -- -- -- -0.118 -- -- -- -- --
110.47 0.492 12.9 -- 3.15 -- -- -- -0.125 9.2 -- -- -- --
107.06 0.482 12.9 -- -- -2.63 -- -- -0.133 -- -57.17 341 13.1 11.2
687.01 1.22 12.9 -- -- -- -- -- -0.108 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.33 temperature 20.0 90 > th dose independent rect. 18 10
2 77.99 temperature 10.0 270 > th dose dependent rect. 16 10
6 78.43 temperature 20.0 270 > th dose independent rect. 16 10
8 78.78 temperature 20.0 90 > th dose independent rect. 7 21
45 82.64 temperature 15.0 270 > th dose dependent rect. 18 16
83 84.39 temperature 10.0 270 > th dose dependent rect. 21 13
109 85.32 temperature 20.0 270 > th dose independent rect. 21 4
126 85.76 temperature 10.0 90 > th dose dependent rect. 7 21
143 86.19 temperature 30.0 270 < th dose dependent rect. 19 11
168 86.69 temperature 10.0 90 > th dose dependent sin 9 NA
214 87.61 temperature 10.0 10 > th dose dependent rect. 7 22
233 88.03 radiation 30.0 270 < th dose independent rect. 15 11
239 88.09 radiation 1.0 10 > th dose independent rect. 12 19
276 88.55 temperature 20.0 90 > th dose independent rect. 18 17
280 88.58 wind 9.0 270 < th dose independent rect. 15 11
294 88.75 temperature 20.0 90 > th dose independent sin 11 NA
307 88.84 temperature 30.0 270 < th dose dependent rect. 11 19
330 89.03 temperature 20.0 90 > th dose independent rect. 21 14
331 89.04 temperature 30.0 90 < th dose dependent sin 9 NA
345 89.19 temperature 20.0 10 > th dose independent rect. 21 15
349 89.22 radiation 1.0 90 < th dose independent rect. 7 21
361 89.31 temperature 10.0 720 > th dose dependent rect. 15 4
367 89.37 radiation 1.0 90 < th dose independent rect. 12 16
370 89.38 radiation 1.0 90 < th dose independent rect. 9 19
372 89.38 temperature 15.0 720 > th dose dependent rect. 16 2
393 89.54 precipitation 0.1 270 < th dose independent rect. 2 13
395 89.54 precipitation 0.1 270 < th dose dependent rect. 2 13
404 89.63 temperature 25.0 270 > th dose independent rect. 16 18
414 89.70 temperature 10.0 270 > th dose independent rect. 15 11
415 89.70 temperature 10.0 270 > th dose independent rect. 2 13
416 89.70 atmosphere 1015.0 270 < th dose independent rect. 2 13
440 89.80 atmosphere 1015.0 270 < th dose independent rect. 16 10
447 89.86 precipitation 0.1 270 < th dose independent rect. 15 11
448 89.86 precipitation 0.1 270 < th dose dependent rect. 15 11
507 90.19 radiation 10.0 90 < th dose dependent rect. 13 15
517 90.22 radiation 1.0 90 < th dose dependent rect. 7 21
521 90.26 radiation 10.0 90 < th dose dependent rect. 15 13
523 90.27 temperature 30.0 90 < th dose dependent rect. 23 8
541 90.36 radiation 1.0 90 < th dose dependent rect. 9 19
546 90.41 radiation 1.0 90 < th dose independent rect. 17 11
590 90.67 temperature 25.0 720 > th dose independent rect. 16 2
602 90.73 temperature 15.0 10 > th dose dependent rect. 21 15
607 90.77 atmosphere 995.0 270 > th dose independent rect. 2 13
623 90.85 atmosphere 1015.0 90 < th dose independent rect. 7 21
626 90.88 temperature 15.0 270 > th dose dependent rect. 7 3
633 90.92 atmosphere 1015.0 90 < th dose independent rect. 18 10
635 90.92 radiation 1.0 10 > th dose independent rect. 14 17
641 90.94 temperature 25.0 270 < th dose independent rect. 19 11
656 91.04 radiation 10.0 90 < th dose dependent rect. 17 11
664 91.11 radiation 1.0 30 < th dose dependent sin 13 NA
673 91.18 wind 9.0 270 < th dose independent rect. 2 13
706 91.32 radiation 1.0 30 < th dose independent sin 13 NA
731 91.40 radiation 1.0 30 > th dose independent rect. 10 23
759 91.50 wind 9.0 270 < th dose independent rect. 6 13
854 91.90 temperature 10.0 1440 > th dose independent rect. 19 10
857 91.90 temperature 30.0 1440 < th dose independent rect. 19 10
861 91.90 humidity 50.0 1440 > th dose independent rect. 19 10
863 91.90 atmosphere 995.0 1440 > th dose independent rect. 19 10
864 91.90 radiation 20.0 1440 < th dose independent rect. 19 10
876 91.90 temperature 10.0 1440 > th dose independent rect. 5 14
881 91.91 humidity 50.0 270 > th dose independent rect. 15 11
922 92.07 radiation 40.0 270 < th dose dependent rect. 15 11
956 92.20 humidity 60.0 90 > th dose independent rect. 18 10
957 92.20 atmosphere 995.0 270 > th dose independent rect. 15 11
959 92.21 atmosphere 1015.0 10 < th dose independent rect. 7 22
963 92.22 humidity 90.0 720 < th dose independent rect. 16 1
966 92.22 radiation 40.0 270 < th dose dependent sin 10 NA
968 92.23 precipitation 0.1 90 < th dose independent rect. 4 14
969 92.23 wind 7.0 90 < th dose independent rect. 7 21
971 92.23 precipitation 0.1 90 < th dose dependent rect. 4 14
992 92.33 temperature 15.0 30 > th dose dependent rect. 7 5