Os01g0346400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0346400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.45 | 0.464 | 9.1 | 1.86 | 0.572 | 0.996 | -0.59 | -2.6 | 1.47 | 12.4 | 9.99 | 1452 | -- | -- |
| 108.42 | 0.485 | 9.11 | 1.84 | 0.585 | 1.04 | -0.706 | -- | 1.46 | 12.3 | 10 | 1506 | -- | -- |
| 98.95 | 0.463 | 9.1 | 1.86 | 0.572 | 0.996 | -- | -2.6 | 1.47 | 12.4 | 9.992 | 1449 | -- | -- |
| 109.76 | 0.488 | 9.11 | 1.86 | 0.611 | 1.07 | -- | -- | 1.46 | 12.4 | 9.991 | 1544 | -- | -- |
| 107.81 | 0.484 | 9.1 | 1.64 | -- | 1.25 | -- | -2.54 | 1.47 | -- | 9.982 | 2611 | -- | -- |
| 133.72 | 0.542 | 9.11 | 1.92 | 0.55 | -- | -0.407 | -- | 1.32 | 12.5 | -- | -- | -- | -- |
| 134.42 | 0.543 | 9.11 | 1.91 | 0.551 | -- | -- | -- | 1.32 | 12.6 | -- | -- | -- | -- |
| 115.96 | 0.502 | 9.1 | 1.6 | -- | 1.48 | -- | -- | 1.47 | -- | 9.987 | 2634 | -- | -- |
| 158.69 | 0.587 | 9.1 | -- | 0.889 | 2.14 | -- | -- | 1.41 | 12.5 | 9.852 | 4573 | -- | -- |
| 153.49 | 0.579 | 9.12 | 1.89 | -- | -- | -- | -- | 1.31 | -- | -- | -- | -- | -- |
| 230.46 | 0.71 | 9.16 | -- | 0.523 | -- | -- | -- | 1.1 | 12.4 | -- | -- | -- | -- |
| 147.85 | 0.566 | 9.1 | -- | -- | 2.14 | -- | -- | 1.4 | -- | 9.9 | 32766 | -- | -- |
| 247.67 | 0.735 | 9.17 | -- | -- | -- | -- | -- | 1.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.36 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 3 | 90.58 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 17 | 16 |
| 4 | 90.59 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 10 | 90.88 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 2 | 7 |
| 17 | 92.77 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 18 |
| 18 | 93.07 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 16 | 17 |
| 19 | 93.16 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 20 | 93.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 21 | 93.23 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 37 | 93.48 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 38 | 93.65 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 39 | 93.65 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 41 | 93.90 | radiation | 10.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 71 | 94.67 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 73 | 94.68 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 94 | 94.83 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 96 | 94.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 6 |
| 112 | 94.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 113 | 94.92 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 119 | 95.01 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 120 | 95.01 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 121 | 95.02 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 124 | 95.07 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 148 | 95.52 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 177 | 95.72 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 178 | 95.73 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 196 | 95.92 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 198 | 95.92 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 229 | 96.05 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 232 | 96.08 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 236 | 96.08 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 250 | 96.13 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 274 | 96.20 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 276 | 96.20 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 279 | 96.21 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 285 | 96.22 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 299 | 96.29 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 302 | 96.30 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 338 | 96.34 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 339 | 96.34 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 349 | 96.37 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 353 | 96.41 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 358 | 96.42 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 361 | 96.44 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 363 | 96.44 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 367 | 96.45 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 369 | 96.46 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 382 | 96.50 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 394 | 96.54 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 395 | 96.55 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 415 | 96.58 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 425 | 96.61 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 426 | 96.61 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 433 | 96.62 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 434 | 96.62 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 441 | 96.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 469 | 96.72 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 471 | 96.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 476 | 96.74 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 480 | 96.76 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 488 | 96.79 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 496 | 96.84 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 500 | 96.86 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 517 | 96.91 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 10 |
| 526 | 96.96 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 541 | 97.03 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 545 | 97.03 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 551 | 97.04 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 554 | 97.05 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 555 | 97.05 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 559 | 97.06 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 564 | 97.07 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 566 | 97.08 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 597 | 97.13 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 601 | 97.13 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 637 | 97.25 | temperature | 20.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 670 | 97.30 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 673 | 97.30 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 682 | 97.31 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 685 | 97.32 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 687 | 97.32 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 689 | 97.32 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 692 | 97.33 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 704 | 97.36 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 709 | 97.37 | temperature | 20.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 714 | 97.37 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 718 | 97.38 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 726 | 97.39 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 734 | 97.40 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 741 | 97.42 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 746 | 97.42 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 7 | 7 |
| 750 | 97.43 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 764 | 97.46 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 769 | 97.47 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 772 | 97.47 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 804 | 97.54 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 4 | 20 |
| 810 | 97.55 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 4 | 18 |
| 812 | 97.55 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 813 | 97.56 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 817 | 97.56 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 4 | 16 |
| 819 | 97.56 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 826 | 97.56 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 843 | 97.58 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 845 | 97.58 | radiation | 10.0 | 1440 | < th | dose independent | no | NA | NA |
| 856 | 97.58 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 858 | 97.58 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 864 | 97.59 | radiation | 10.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 865 | 97.59 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 867 | 97.59 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 943 | 97.70 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 985 | 97.78 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 7 | 6 |