FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0343800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.91 (0.0483) R2 : 0.375
β1 : -1.24 (0.176) R2dD : 0.0765 R2D : 0.157
β2 : 0.529 (0.109) R2dC : 0.0319 R2C : 0.0374
β3 : 3.45 (0.346) R2dE : 0.346 R2E : 0.0151
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 11 (1.56) R2dD*E : 0.171 R2D*E : -0.186
γ1 : 0.529 (0.101) R2dN8 : 0.0532 R2N8 : 0.0439
σ : 0.86
deviance : 340.68
__
_____
C
peak time of C : 12.8
E
wheather : wind
threshold : 6.889
memory length : 3476
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.93
open length of G : 0.927

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
332.86 0.857 3.91 -1.18 0.526 3.52 -1.4 11.4 0.535 13.3 6.85 3549 7.94 0.94
376.63 0.904 3.83 -1 0.422 3 -1.58 -- 0.805 12.9 6.5 1565 7.95 0.976
340.68 0.86 3.91 -1.24 0.529 3.45 -- 11 0.529 12.8 6.889 3476 7.93 0.927
365.22 0.89 3.83 -1.48 0.536 2.37 -- -- 0.568 11.8 6.5 1544 8.25 0.831
358.03 0.881 3.92 -1.25 -- 3.5 -- 11 0.522 -- 6.897 3480 7.94 0.951
410.13 0.949 3.84 -1.7 0.56 -- -1.13 -- 0.407 13.1 -- -- -- --
415.34 0.954 3.84 -1.75 0.562 -- -- -- 0.4 12.7 -- -- -- --
371.07 0.897 3.74 -0.755 -- 2.07 -- -- 0.766 -- 6.132 4570 8.28 1.51
414.39 0.948 3.8 -- 0.541 2.41 -- -- 0.593 11.9 6.357 1481 8.38 1.57
435.06 0.975 3.85 -1.77 -- -- -- -- 0.39 -- -- -- -- --
495.66 1.04 3.8 -- 0.589 -- -- -- 0.595 12.9 -- -- -- --
384.27 0.913 3.74 -- -- 2.59 -- -- 0.755 -- 6.132 4888 8.32 1.48
517.33 1.06 3.81 -- -- -- -- -- 0.586 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 349.36 wind 7.0 4320 > th dose independent rect. 8 1
2 349.46 wind 5.0 4320 > th dose dependent rect. 19 4
8 351.20 wind 5.0 4320 > th dose independent rect. 21 1
9 351.38 wind 7.0 4320 < th dose independent rect. 18 10
14 351.96 wind 7.0 1440 < th dose independent rect. 8 1
16 352.05 wind 5.0 1440 > th dose dependent rect. 9 1
21 352.61 wind 7.0 4320 < th dose independent rect. 18 5
25 352.76 wind 7.0 4320 > th dose independent rect. 18 9
33 353.13 wind 5.0 4320 < th dose independent rect. 20 2
35 353.45 humidity 90.0 1440 < th dose dependent rect. 3 1
38 353.53 wind 5.0 4320 > th dose dependent rect. 19 8
49 354.17 wind 7.0 4320 > th dose independent rect. 18 4
111 356.82 temperature 20.0 720 < th dose independent rect. 18 1
116 357.04 wind 7.0 14400 > th dose independent rect. 6 3
158 358.25 wind 7.0 1440 < th dose independent rect. 5 4
177 358.63 temperature 20.0 4320 > th dose independent rect. 21 1
179 358.77 temperature 20.0 4320 < th dose independent rect. 21 1
180 358.77 temperature 20.0 720 < th dose independent rect. 8 12
188 358.97 temperature 20.0 720 < th dose independent rect. 9 10
195 359.19 temperature 25.0 1440 < th dose dependent rect. 11 1
214 359.94 wind 7.0 14400 < th dose independent rect. 6 3
217 360.22 humidity 90.0 1440 < th dose dependent rect. 2 4
247 361.31 temperature 20.0 720 < th dose dependent rect. 19 1
252 361.52 temperature 20.0 4320 > th dose independent rect. 18 5
257 361.78 atmosphere 995.0 14400 > th dose independent rect. 10 4
258 361.82 humidity 50.0 1440 > th dose dependent rect. 3 1
259 361.82 humidity 80.0 1440 > th dose dependent rect. 5 1
266 362.14 humidity 50.0 1440 > th dose dependent rect. 5 1
269 362.19 atmosphere 995.0 90 > th dose dependent rect. 9 18
270 362.21 precipitation 0.1 14400 > th dose dependent rect. 20 2
283 362.51 atmosphere 995.0 10 > th dose dependent rect. 9 18
290 362.82 humidity 90.0 1440 < th dose dependent rect. 5 1
291 362.85 wind 5.0 4320 > th dose dependent rect. 17 17
302 363.19 precipitation 0.1 14400 > th dose dependent rect. 20 5
307 363.37 wind 9.0 4320 > th dose dependent rect. 20 14
318 363.68 radiation 20.0 1440 > th dose independent rect. 6 1
339 363.89 precipitation 0.1 14400 < th dose independent rect. 20 1
340 363.89 precipitation 0.1 14400 < th dose dependent rect. 20 1
344 363.95 temperature 20.0 1440 > th dose independent rect. 18 1
349 364.06 humidity 50.0 1440 > th dose dependent rect. 2 4
354 364.11 precipitation 0.1 14400 > th dose independent rect. 20 1
356 364.17 humidity 80.0 30 < th dose independent rect. 20 11
361 364.28 atmosphere 995.0 14400 < th dose independent rect. 17 1
362 364.28 atmosphere 995.0 14400 < th dose dependent rect. 17 1
397 364.66 wind 5.0 1440 > th dose independent rect. 7 6
416 364.74 atmosphere 1005.0 90 > th dose dependent rect. 9 18
425 364.97 atmosphere 1005.0 90 > th dose dependent rect. 9 21
431 365.03 temperature 20.0 4320 < th dose independent rect. 18 5
433 365.05 wind 5.0 4320 > th dose dependent sin 12 NA
440 365.21 humidity 90.0 1440 < th dose independent rect. 5 1
442 365.23 wind 5.0 1440 < th dose independent rect. 7 6
446 365.27 temperature 20.0 1440 > th dose independent rect. 18 10
448 365.27 radiation 1.0 14400 < th dose dependent rect. 22 6
450 365.29 temperature 20.0 720 < th dose independent sin 21 NA
461 365.41 temperature 20.0 720 < th dose dependent rect. 12 8
475 365.54 temperature 20.0 1440 > th dose independent sin 16 NA
485 365.68 temperature 10.0 720 > th dose dependent rect. 11 20
493 365.75 atmosphere 995.0 14400 > th dose independent rect. 17 2
516 366.02 temperature 10.0 720 > th dose dependent rect. 11 18
518 366.09 humidity 90.0 1440 > th dose independent rect. 5 1
521 366.13 temperature 25.0 720 < th dose dependent rect. 8 17
550 366.42 wind 5.0 4320 > th dose independent rect. 17 17
581 366.61 wind 7.0 4320 < th dose independent rect. 18 16
582 366.64 humidity 80.0 1440 < th dose independent rect. 22 1
588 366.66 temperature 20.0 270 > th dose independent rect. 11 22
596 366.75 temperature 20.0 1440 < th dose independent rect. 18 10
598 366.76 wind 1.0 14400 > th dose independent rect. 16 8
603 366.79 temperature 20.0 1440 < th dose independent rect. 18 7
656 367.08 humidity 80.0 270 < th dose dependent rect. 23 8
658 367.11 humidity 80.0 270 < th dose dependent rect. 21 10
662 367.14 wind 1.0 14400 < th dose independent rect. 16 8
665 367.15 wind 9.0 4320 < th dose independent rect. 20 14
687 367.28 temperature 20.0 1440 < th dose independent sin 16 NA
697 367.36 atmosphere 995.0 14400 > th dose independent rect. 10 9
708 367.45 temperature 25.0 720 < th dose dependent sin 20 NA
755 367.66 temperature 20.0 720 < th dose independent rect. 8 15
834 367.94 wind 1.0 14400 > th dose independent rect. 21 2
838 367.95 wind 9.0 4320 > th dose independent rect. 20 14
854 368.01 temperature 20.0 720 < th dose dependent rect. 17 7
917 368.24 temperature 15.0 720 > th dose dependent sin 16 NA
950 368.32 wind 7.0 4320 < th dose independent sin 13 NA
951 368.32 wind 5.0 1440 > th dose independent rect. 12 1
998 368.52 wind 3.0 1440 < th dose dependent rect. 4 2