FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0342900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Adenosine monophosphate binding protein 1 AMPBP1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0317) R2 : 0.171
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.54 (0.6) R2dE : 0.155 R2E : 0.146
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.218 (0.0668) R2dN8 : 0.0251 R2N8 : 0.0167
σ : 0.596
deviance : 163.82
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 28.18
memory length : 64
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.9
open length of G : 9.41

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154.4 0.584 3.12 0.212 0.143 13.5 -0.155 -82.2 0.278 7.32 26.48 38 21.6 0.434
161.76 0.592 3.08 0.61 0.0332 7.78 0.165 -- 0.206 22.1 28.13 63 20.9 6.77
154.42 0.583 3.12 0.219 0.144 12.8 -- -78.3 0.278 7.02 26.48 38 21.6 0.434
154.42 0.579 3.07 0.559 0.143 5.55 -- -- 0.278 7.02 28.16 63 20.9 8.57
155.49 0.584 3.12 0.222 -- 12.8 -- -78.3 0.281 -- 26.48 38 21.6 0.434
184.96 0.638 3.08 0.577 0.106 -- -0.205 -- 0.264 6.89 -- -- -- --
185.02 0.637 3.08 0.573 0.11 -- -- -- 0.264 5.93 -- -- -- --
155.5 0.581 3.08 0.562 -- 5.5 -- -- 0.281 -- 28.14 63 20.9 9.21
162.64 0.594 3.09 -- 0.15 5.59 -- -- 0.216 6.79 28.2 64 20.9 9.25
185.64 0.637 3.08 0.576 -- -- -- -- 0.267 -- -- -- -- --
193.66 0.651 3.09 -- 0.119 -- -- -- 0.201 5.7 -- -- -- --
163.82 0.596 3.09 -- -- 5.54 -- -- 0.218 -- 28.18 64 20.9 9.41
194.39 0.651 3.09 -- -- -- -- -- 0.203 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.16 temperature 25.0 30 > th dose dependent rect. 21 1
3 170.31 precipitation 0.1 10 > th dose independent rect. 19 3
5 170.31 precipitation 0.1 10 > th dose dependent rect. 19 3
7 170.32 humidity 60.0 90 < th dose independent rect. 16 18
8 170.35 humidity 60.0 270 < th dose independent rect. 18 1
9 170.39 humidity 60.0 270 < th dose dependent rect. 18 1
10 170.44 precipitation 0.1 10 > th dose independent rect. 19 1
20 170.44 humidity 60.0 90 < th dose independent rect. 17 16
21 170.44 precipitation 0.1 10 > th dose dependent rect. 19 1
35 170.46 humidity 60.0 1440 > th dose independent rect. 23 10
36 170.46 precipitation 0.1 30 > th dose dependent sin 23 NA
37 170.46 wind 1.0 10 < th dose dependent rect. 8 7
46 170.49 wind 1.0 90 > th dose independent rect. 9 10
54 170.50 humidity 60.0 90 < th dose dependent rect. 17 17
58 170.53 precipitation 0.1 30 > th dose dependent rect. 4 16
60 170.56 humidity 60.0 10 < th dose independent rect. 16 19
61 170.56 precipitation 0.1 30 > th dose dependent rect. 7 13
67 170.59 humidity 70.0 1440 > th dose independent rect. 23 8
74 170.66 radiation 20.0 90 < th dose independent rect. 19 15
76 170.68 humidity 60.0 270 < th dose independent rect. 8 1
103 170.68 humidity 60.0 270 < th dose dependent rect. 8 1
129 170.69 wind 1.0 10 < th dose independent rect. 6 4
146 170.76 humidity 60.0 10 < th dose dependent rect. 16 18
169 170.82 humidity 90.0 30 > th dose dependent rect. 19 1
173 170.85 humidity 60.0 4320 < th dose independent rect. 8 1
204 170.93 radiation 10.0 270 < th dose independent rect. 16 16
226 171.02 wind 1.0 10 < th dose dependent rect. 9 1
228 171.03 wind 1.0 10 < th dose independent rect. 6 12
232 171.05 wind 1.0 10 < th dose independent rect. 6 10
255 171.13 wind 1.0 10 < th dose independent rect. 9 1
258 171.15 radiation 40.0 90 < th dose independent rect. 19 14
260 171.17 humidity 60.0 30 < th dose independent rect. 9 1
290 171.17 humidity 60.0 10 < th dose dependent rect. 9 1
371 171.19 humidity 60.0 1440 > th dose independent rect. 2 7
393 171.23 radiation 40.0 90 < th dose dependent rect. 19 15
413 171.25 precipitation 0.1 90 < th dose independent rect. 9 10
414 171.25 precipitation 0.1 90 < th dose dependent rect. 9 10
459 171.32 wind 1.0 10 < th dose independent rect. 9 9
463 171.33 wind 1.0 10 < th dose independent rect. 9 6
524 171.46 radiation 40.0 10 > th dose dependent rect. 9 1
590 171.59 humidity 60.0 1440 > th dose independent rect. 8 1
617 171.65 precipitation 0.1 30 > th dose independent rect. 4 16
621 171.68 precipitation 0.1 30 > th dose independent rect. 7 13
626 171.71 precipitation 0.1 90 > th dose dependent rect. 18 14
632 171.73 humidity 60.0 90 > th dose independent rect. 19 14
637 171.75 wind 1.0 10 < th dose dependent rect. 6 9
647 171.75 precipitation 0.1 30 > th dose dependent rect. 4 22
680 171.83 temperature 10.0 90 > th dose dependent rect. 22 21
681 171.84 temperature 10.0 90 > th dose dependent rect. 9 10
728 171.91 temperature 30.0 90 < th dose dependent rect. 5 16
761 171.98 precipitation 0.1 30 > th dose dependent rect. 7 19
785 172.10 temperature 25.0 90 < th dose independent rect. 5 16
836 172.21 temperature 30.0 90 < th dose independent rect. 19 14
855 172.25 temperature 30.0 270 < th dose dependent rect. 3 17
856 172.27 precipitation 0.1 90 > th dose independent rect. 18 17
860 172.30 precipitation 0.1 90 > th dose independent rect. 18 14
873 172.37 temperature 10.0 90 > th dose independent rect. 9 10
874 172.37 atmosphere 1015.0 90 < th dose independent rect. 9 10
875 172.37 wind 9.0 90 < th dose independent rect. 19 14
876 172.37 temperature 10.0 90 > th dose independent rect. 19 14
878 172.37 atmosphere 995.0 90 > th dose independent rect. 19 14
887 172.43 precipitation 0.1 30 > th dose independent sin 23 NA
922 172.57 wind 9.0 90 < th dose independent rect. 9 10
946 172.62 radiation 40.0 10 > th dose dependent sin 12 NA
949 172.63 humidity 90.0 90 > th dose independent rect. 18 1
976 172.72 radiation 20.0 270 < th dose dependent rect. 16 16
994 172.83 radiation 30.0 1440 < th dose independent rect. 23 8
995 172.83 precipitation 0.1 30 < th dose independent rect. 21 23
996 172.83 temperature 30.0 270 > th dose dependent rect. 18 1