Os01g0341300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0341300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 561.68 | 1.11 | 3.48 | 1.17 | 0.853 | 2.93 | 1.45 | 12.5 | 0.168 | 15.7 | 5.082 | 4287 | 20 | 3.04 |
| 665.45 | 1.2 | 3.29 | 1.66 | 1.05 | 2.9 | 0.49 | -- | 0.449 | 15.2 | 5.575 | 10641 | 19.7 | 1.47 |
| 567.11 | 1.11 | 3.47 | 1.22 | 0.839 | 2.96 | -- | 12.6 | 0.188 | 15.5 | 5.2 | 4083 | 20 | 3.05 |
| 625.34 | 1.16 | 3.23 | 0.936 | 0.71 | 2.69 | -- | -- | 0.544 | 15.1 | 7.056 | 9952 | 20.3 | 0.283 |
| 607.37 | 1.15 | 3.46 | 1.21 | -- | 2.91 | -- | 12.5 | 0.178 | -- | 5.3 | 4108 | 20 | 3.03 |
| 831.88 | 1.35 | 3.44 | 0.964 | 0.836 | -- | 1.22 | -- | -0.00391 | 15.4 | -- | -- | -- | -- |
| 836.63 | 1.35 | 3.44 | 0.987 | 0.84 | -- | -- | -- | 0.00319 | 15.3 | -- | -- | -- | -- |
| 644.85 | 1.18 | 3.35 | 0.607 | -- | 3.01 | -- | -- | 0.375 | -- | 8.643 | 10037 | 20.4 | 0.339 |
| 620.15 | 1.16 | 3.27 | -- | 0.819 | 3.26 | -- | -- | 0.42 | 14.6 | 7.532 | 10087 | 20.4 | 0.212 |
| 876.5 | 1.38 | 3.44 | 0.951 | -- | -- | -- | -- | -0.019 | -- | -- | -- | -- | -- |
| 862.3 | 1.37 | 3.46 | -- | 0.821 | -- | -- | -- | -0.107 | 15.3 | -- | -- | -- | -- |
| 646.32 | 1.18 | 3.36 | -- | -- | 3.11 | -- | -- | 0.154 | -- | 7.623 | 9964 | 20.3 | 0.117 |
| 900.38 | 1.4 | 3.46 | -- | -- | -- | -- | -- | -0.125 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 562.23 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 3 | 567.36 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 10 | 571.42 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 123 | 585.52 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 131 | 586.96 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 138 | 588.92 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 5 |
| 144 | 590.53 | humidity | 90 | 1440 | < th | dose dependent | rect. | 24 | 7 |
| 151 | 591.94 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 155 | 593.02 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 156 | 593.02 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 215 | 602.76 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 249 | 603.68 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 250 | 603.69 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 286 | 605.60 | humidity | 90 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 297 | 606.77 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 373 | 612.12 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 376 | 612.27 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 385 | 613.20 | humidity | 70 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 400 | 613.66 | humidity | 50 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 419 | 615.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 21 | 11 |
| 427 | 615.61 | humidity | 80 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 439 | 616.84 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 449 | 617.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 470 | 619.37 | wind | 5 | 1440 | > th | dose independent | rect. | 7 | 17 |
| 539 | 622.29 | humidity | 70 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 542 | 622.41 | wind | 5 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 574 | 623.60 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 594 | 624.03 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 2 |
| 602 | 624.36 | atmosphere | 995 | 14400 | > th | dose independent | sin | 22 | NA |
| 603 | 624.36 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 616 | 624.83 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 617 | 624.84 | atmosphere | 995 | 14400 | < th | dose independent | sin | 22 | NA |
| 665 | 625.87 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 674 | 626.06 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 23 | NA |
| 691 | 626.54 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 694 | 626.63 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 10 |
| 714 | 627.06 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 4 |
| 719 | 627.22 | wind | 5 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 736 | 627.53 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 737 | 627.54 | wind | 5 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 747 | 627.57 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 783 | 628.20 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 787 | 628.22 | humidity | 50 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 834 | 628.79 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 916 | 629.56 | wind | 5 | 1440 | > th | dose independent | no | NA | NA |
| 984 | 630.01 | wind | 5 | 1440 | > th | dose independent | rect. | 20 | 23 |