Os01g0339600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0339600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.62 | 0.307 | 8.17 | -1.03 | 0.703 | -4.44 | -0.11 | -10.5 | -0.353 | 4.42 | 9.601 | 200 | -- | -- |
| 42.98 | 0.305 | 8.21 | -0.91 | 0.678 | -2.33 | 0.0384 | -- | -0.348 | 4.31 | 10.4 | 184 | -- | -- |
| 42.35 | 0.303 | 8.17 | -1.03 | 0.694 | -4.62 | -- | -10.9 | -0.354 | 4.39 | 9.7 | 185 | -- | -- |
| 42.88 | 0.305 | 8.21 | -0.935 | 0.697 | -2.21 | -- | -- | -0.355 | 4.44 | 10.4 | 184 | -- | -- |
| 68.26 | 0.385 | 8.17 | -1.01 | -- | -4.89 | -- | -10.2 | -0.344 | -- | 9.6 | 185 | -- | -- |
| 51.73 | 0.337 | 8.2 | -0.865 | 0.754 | -- | -0.303 | -- | -0.329 | 4.52 | -- | -- | -- | -- |
| 51.97 | 0.338 | 8.2 | -0.863 | 0.752 | -- | -- | -- | -0.327 | 4.48 | -- | -- | -- | -- |
| 68.5 | 0.385 | 8.21 | -0.926 | -- | -2.7 | -- | -- | -0.343 | -- | 10.4 | 183 | -- | -- |
| 65.63 | 0.377 | 8.19 | -- | 0.671 | -1.79 | -- | -- | -0.251 | 4.47 | 10.4 | 172 | -- | -- |
| 82.21 | 0.424 | 8.2 | -0.834 | -- | -- | -- | -- | -0.307 | -- | -- | -- | -- | -- |
| 71.6 | 0.396 | 8.18 | -- | 0.736 | -- | -- | -- | -0.231 | 4.5 | -- | -- | -- | -- |
| 90.7 | 0.444 | 8.19 | -- | -- | -2.26 | -- | -- | -0.237 | -- | 10.4 | 176 | -- | -- |
| 100.55 | 0.468 | 8.18 | -- | -- | -- | -- | -- | -0.215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.81 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 5 |
| 3 | 43.51 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 5 |
| 5 | 43.64 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 9 |
| 37 | 44.09 | wind | 9 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 38 | 44.16 | wind | 9 | 720 | > th | dose independent | rect. | 12 | 1 |
| 41 | 44.19 | wind | 9 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 43 | 44.24 | wind | 7 | 90 | > th | dose dependent | rect. | 12 | 22 |
| 46 | 44.38 | wind | 7 | 10 | > th | dose dependent | rect. | 16 | 2 |
| 47 | 44.39 | wind | 7 | 90 | > th | dose dependent | rect. | 12 | 14 |
| 51 | 44.42 | wind | 7 | 90 | > th | dose dependent | rect. | 12 | 12 |
| 58 | 44.45 | wind | 9 | 10 | > th | dose dependent | sin | 16 | NA |
| 62 | 44.49 | wind | 9 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 75 | 44.66 | wind | 7 | 10 | > th | dose independent | rect. | 16 | 3 |
| 125 | 44.97 | wind | 9 | 90 | > th | dose independent | rect. | 12 | 22 |
| 137 | 45.03 | wind | 9 | 90 | > th | dose independent | rect. | 12 | 14 |
| 153 | 45.06 | wind | 5 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 166 | 45.07 | wind | 9 | 90 | > th | dose independent | rect. | 12 | 11 |
| 170 | 45.07 | wind | 7 | 90 | > th | dose dependent | rect. | 12 | 9 |
| 238 | 45.16 | wind | 9 | 270 | > th | dose dependent | sin | 10 | NA |
| 276 | 45.23 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 18 |
| 286 | 45.25 | wind | 9 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 296 | 45.27 | wind | 9 | 90 | > th | dose independent | sin | 15 | NA |
| 301 | 45.28 | wind | 9 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 305 | 45.29 | wind | 7 | 270 | < th | dose independent | rect. | 15 | 23 |
| 376 | 45.35 | wind | 9 | 30 | > th | dose dependent | rect. | 17 | 9 |
| 419 | 45.37 | wind | 9 | 1440 | < th | dose independent | rect. | 3 | 10 |
| 429 | 45.38 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 7 |
| 432 | 45.39 | wind | 9 | 1440 | < th | dose independent | rect. | 1 | 12 |
| 463 | 45.39 | wind | 3 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 523 | 45.43 | wind | 5 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 525 | 45.43 | wind | 9 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 556 | 45.47 | wind | 9 | 90 | > th | dose independent | rect. | 17 | 17 |
| 570 | 45.49 | wind | 7 | 90 | > th | dose independent | rect. | 16 | 1 |
| 585 | 45.50 | wind | 1 | 10 | > th | dose dependent | rect. | 12 | 12 |
| 613 | 45.52 | wind | 3 | 10 | > th | dose dependent | rect. | 12 | 14 |
| 632 | 45.54 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 10 |
| 647 | 45.55 | wind | 9 | 720 | < th | dose independent | rect. | 9 | 18 |
| 678 | 45.58 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 7 |
| 702 | 45.60 | wind | 9 | 720 | > th | dose independent | rect. | 20 | 18 |
| 707 | 45.61 | wind | 9 | 720 | < th | dose independent | rect. | 9 | 16 |
| 724 | 45.62 | wind | 9 | 270 | > th | dose dependent | no | NA | NA |
| 726 | 45.62 | wind | 9 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 741 | 45.62 | wind | 9 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 791 | 45.64 | wind | 9 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 796 | 45.64 | wind | 9 | 270 | > th | dose dependent | rect. | 9 | 14 |
| 832 | 45.65 | wind | 5 | 90 | > th | dose dependent | rect. | 15 | 10 |
| 890 | 45.69 | wind | 9 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 940 | 45.72 | wind | 9 | 30 | > th | dose dependent | no | NA | NA |
| 964 | 45.72 | wind | 9 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 995 | 45.72 | wind | 9 | 30 | > th | dose dependent | rect. | 21 | 23 |