Os01g0339400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0339400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 215.77 | 0.69 | 4.69 | -0.778 | 0.448 | -1.51 | 2.06 | 2.14 | -0.735 | 22.7 | 23.19 | 2112 | -- | -- |
| 221.78 | 0.694 | 4.59 | 0.08 | 0.495 | -1.49 | 1.94 | -- | -0.461 | 22.8 | 22.81 | 1970 | -- | -- |
| 232.8 | 0.711 | 4.68 | -0.75 | 0.477 | -1.5 | -- | 1.86 | -0.697 | 22.1 | 23.17 | 1997 | -- | -- |
| 236.81 | 0.717 | 4.6 | -0.0275 | 0.455 | -1.5 | -- | -- | -0.48 | 21.8 | 22.81 | 2132 | -- | -- |
| 244.36 | 0.728 | 4.67 | -0.7 | -- | -1.58 | -- | 1.65 | -0.721 | -- | 23.2 | 2177 | -- | -- |
| 310.69 | 0.826 | 4.46 | 0.628 | 0.582 | -- | 1.97 | -- | 0.116 | 22.7 | -- | -- | -- | -- |
| 326.38 | 0.846 | 4.47 | 0.552 | 0.583 | -- | -- | -- | 0.112 | 22.1 | -- | -- | -- | -- |
| 248.73 | 0.735 | 4.6 | -0.027 | -- | -1.55 | -- | -- | -0.513 | -- | 22.8 | 2185 | -- | -- |
| 236.83 | 0.717 | 4.6 | -- | 0.454 | -1.49 | -- | -- | -0.474 | 21.8 | 22.83 | 2133 | -- | -- |
| 346.93 | 0.87 | 4.45 | 0.56 | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
| 334.41 | 0.855 | 4.48 | -- | 0.585 | -- | -- | -- | 0.0508 | 22.2 | -- | -- | -- | -- |
| 248.74 | 0.735 | 4.59 | -- | -- | -1.55 | -- | -- | -0.498 | -- | 22.81 | 2185 | -- | -- |
| 355.21 | 0.88 | 4.46 | -- | -- | -- | -- | -- | 0.0511 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 212.38 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 2 | 213.10 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 3 | 213.52 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 4 | 214.01 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 7 | 216.27 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 11 | 217.22 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 19 | 218.38 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 33 | 219.24 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 3 |
| 42 | 219.42 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 11 |
| 44 | 219.44 | temperature | 25 | 1440 | < th | dose independent | sin | 21 | NA |
| 81 | 221.15 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 93 | 221.23 | temperature | 25 | 1440 | > th | dose independent | sin | 21 | NA |
| 123 | 221.86 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 127 | 221.99 | radiation | 1 | 4320 | < th | dose dependent | sin | 14 | NA |
| 149 | 222.34 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 165 | 222.77 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 172 | 222.82 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 175 | 222.84 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 179 | 222.86 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 185 | 222.90 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 188 | 222.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 206 | 223.21 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 210 | 223.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 213 | 223.34 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 219 | 223.41 | radiation | 1 | 4320 | < th | dose dependent | rect. | 8 | 21 |
| 222 | 223.44 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 243 | 223.70 | radiation | 1 | 4320 | < th | dose dependent | rect. | 8 | 12 |
| 245 | 223.70 | radiation | 1 | 4320 | < th | dose dependent | rect. | 8 | 15 |
| 246 | 223.70 | radiation | 1 | 4320 | < th | dose dependent | rect. | 15 | 19 |
| 293 | 224.00 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 379 | 224.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 387 | 224.55 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 23 |
| 440 | 224.99 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 443 | 225.02 | radiation | 1 | 4320 | < th | dose dependent | rect. | 5 | 15 |
| 451 | 225.05 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 19 |
| 453 | 225.06 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 17 |
| 472 | 225.08 | radiation | 1 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 473 | 225.09 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 506 | 225.15 | radiation | 1 | 4320 | < th | dose dependent | no | NA | NA |
| 507 | 225.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 547 | 225.46 | radiation | 30 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 574 | 225.64 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 577 | 225.66 | radiation | 30 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 579 | 225.67 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 582 | 225.70 | wind | 5 | 43200 | > th | dose independent | sin | 18 | NA |
| 586 | 225.73 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 591 | 225.81 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 594 | 225.85 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 599 | 225.90 | wind | 5 | 43200 | < th | dose independent | sin | 18 | NA |
| 604 | 225.91 | radiation | 30 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 605 | 225.92 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 4 |
| 614 | 226.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 618 | 226.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 629 | 226.17 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 632 | 226.19 | radiation | 1 | 4320 | > th | dose independent | sin | 17 | NA |
| 667 | 226.34 | radiation | 1 | 4320 | > th | dose independent | rect. | 8 | 11 |
| 679 | 226.35 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 696 | 226.37 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 704 | 226.37 | radiation | 30 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 763 | 226.55 | radiation | 1 | 4320 | < th | dose independent | rect. | 8 | 13 |
| 768 | 226.56 | radiation | 1 | 4320 | < th | dose independent | rect. | 8 | 16 |
| 769 | 226.56 | radiation | 1 | 4320 | < th | dose independent | rect. | 8 | 20 |
| 770 | 226.57 | radiation | 1 | 4320 | < th | dose independent | sin | 17 | NA |
| 796 | 226.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 827 | 226.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 924 | 227.15 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 938 | 227.26 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 988 | 227.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 989 | 227.40 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 993 | 227.42 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 995 | 227.43 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 1 |