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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0337600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ATPase, F1 complex, gamma subunit family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.53 (0.0221) R2 : 0.00306
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0551 (0.0466) R2dN8 : 0.00395 R2N8 : 0.00306
σ : 0.417
deviance : 79.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.78 0.375 9.53 -0.453 0.379 -0.279 -0.575 0.294 -0.118 6.05 -4.258 10 -- --
63.85 0.375 9.53 -0.442 0.379 -0.26 -0.589 -- -0.117 5.7 1.18 9 -- --
64.52 0.377 9.53 -0.451 0.377 -0.293 -- 0.274 -0.115 6.06 -4.821 9 -- --
64.67 0.377 9.53 -0.444 0.376 -0.298 -- -- -0.114 6.09 0.1518 9 -- --
68.07 0.384 9.54 -0.348 -- -0.337 -- 0.922 -0.0621 -- -0.00022 600 -- --
64.99 0.378 9.53 -0.454 0.414 -- -0.582 -- -0.117 4.64 -- -- -- --
65.88 0.38 9.53 -0.45 0.409 -- -- -- -0.114 4.59 -- -- -- --
69.03 0.387 9.53 -0.42 -- -0.411 -- -- -0.0712 -- -32.03 504 -- --
69.86 0.391 9.52 -- 0.37 -0.318 -- -- -0.0648 6.26 0.1518 9 -- --
74.81 0.404 9.54 -0.435 -- -- -- -- -0.103 -- -- -- -- --
71.23 0.395 9.52 -- 0.401 -- -- -- -0.0639 4.62 -- -- -- --
73.68 0.4 9.52 -- -- -0.423 -- -- -0.0238 -- -28.72 504 -- --
79.79 0.417 9.53 -- -- -- -- -- -0.0551 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.56 radiation 20.0 10 > th dose independent rect. 11 1
3 61.82 humidity 90.0 30 < th dose dependent rect. 11 1
4 61.88 temperature 10.0 90 > th dose dependent rect. 19 8
6 61.89 radiation 1.0 30 > th dose dependent rect. 11 1
7 61.91 humidity 80.0 30 < th dose independent rect. 11 1
9 61.91 temperature 20.0 30 > th dose dependent rect. 20 7
11 61.96 humidity 60.0 14400 > th dose independent rect. 21 1
20 62.06 temperature 20.0 30 > th dose independent rect. 11 1
21 62.08 temperature 10.0 30 > th dose dependent rect. 11 1
30 62.12 atmosphere 1015.0 30 < th dose independent rect. 12 23
32 62.13 temperature 10.0 30 > th dose dependent rect. 20 16
33 62.15 wind 7.0 30 < th dose independent rect. 11 1
39 62.17 temperature 25.0 30 > th dose dependent rect. 20 11
40 62.18 temperature 15.0 90 > th dose independent rect. 19 8
43 62.20 wind 1.0 90 > th dose independent rect. 3 16
44 62.21 wind 9.0 30 < th dose dependent rect. 11 1
51 62.27 precipitation 0.1 1440 < th dose independent rect. 12 1
52 62.27 temperature 15.0 30 > th dose independent rect. 11 16
53 62.27 precipitation 0.1 1440 < th dose dependent rect. 12 1
55 62.29 atmosphere 1015.0 30 < th dose dependent rect. 11 1
62 62.35 atmosphere 1000.0 90 > th dose independent rect. 19 8
65 62.38 wind 1.0 30 > th dose independent rect. 12 23
67 62.43 wind 9.0 30 < th dose independent rect. 12 23
69 62.43 atmosphere 995.0 90 > th dose dependent rect. 19 8
71 62.44 temperature 15.0 30 > th dose independent rect. 21 23
72 62.45 temperature 10.0 1440 > th dose independent rect. 12 1
76 62.45 atmosphere 995.0 1440 > th dose independent rect. 12 1
78 62.45 temperature 10.0 1440 > th dose independent rect. 13 23
83 62.46 wind 1.0 30 > th dose independent rect. 11 1
84 62.46 temperature 15.0 30 > th dose independent rect. 20 16
86 62.47 humidity 50.0 30 > th dose independent rect. 11 1
87 62.47 humidity 90.0 30 < th dose dependent rect. 11 5
89 62.48 temperature 10.0 30 > th dose independent rect. 11 1
91 62.48 temperature 15.0 1440 > th dose independent rect. 21 1
92 62.48 atmosphere 995.0 30 > th dose independent rect. 11 1
93 62.48 atmosphere 1015.0 30 < th dose independent rect. 11 1
95 62.48 precipitation 0.1 30 < th dose independent rect. 11 1
97 62.48 temperature 10.0 30 > th dose independent rect. 12 23
99 62.48 precipitation 0.1 30 < th dose dependent rect. 11 1
104 62.49 wind 9.0 10 < th dose dependent rect. 11 16
109 62.52 wind 1.0 30 > th dose independent rect. 3 8
116 62.53 atmosphere 1015.0 30 < th dose independent rect. 21 23
132 62.57 wind 3.0 30 > th dose independent rect. 12 8
133 62.57 temperature 15.0 90 > th dose independent rect. 19 21
135 62.57 precipitation 0.1 30 < th dose independent rect. 12 23
136 62.57 precipitation 0.1 30 < th dose dependent rect. 12 23
138 62.59 temperature 15.0 270 > th dose independent rect. 8 17
142 62.60 atmosphere 995.0 30 > th dose independent rect. 12 23
144 62.60 radiation 40.0 10 < th dose dependent rect. 21 23
148 62.61 humidity 90.0 10 < th dose dependent rect. 20 1
158 62.63 atmosphere 1015.0 30 < th dose independent rect. 16 19
163 62.64 humidity 60.0 90 > th dose independent rect. 3 16
167 62.65 radiation 40.0 720 < th dose independent rect. 1 8
173 62.66 atmosphere 1015.0 270 < th dose dependent rect. 11 1
175 62.66 wind 9.0 30 < th dose dependent rect. 11 5
182 62.67 temperature 10.0 1440 > th dose independent rect. 20 10
185 62.67 temperature 30.0 1440 < th dose independent rect. 20 10
189 62.67 humidity 50.0 1440 > th dose independent rect. 20 10
195 62.67 atmosphere 995.0 1440 > th dose independent rect. 20 10
196 62.67 radiation 20.0 1440 < th dose independent rect. 20 10
205 62.67 temperature 10.0 1440 > th dose independent rect. 6 14
212 62.67 humidity 90.0 30 < th dose dependent rect. 11 3
216 62.68 temperature 25.0 90 > th dose independent rect. 19 8
217 62.68 humidity 60.0 10 > th dose independent rect. 4 16
224 62.69 temperature 15.0 10 > th dose independent rect. 20 8
225 62.69 humidity 60.0 30 > th dose independent rect. 3 8
230 62.70 precipitation 0.1 90 < th dose independent rect. 19 8
234 62.70 atmosphere 1015.0 270 < th dose dependent rect. 8 4
235 62.70 precipitation 0.1 90 < th dose dependent rect. 19 8
239 62.71 temperature 15.0 270 > th dose independent rect. 17 21
245 62.72 wind 9.0 30 < th dose independent rect. 11 16
246 62.72 precipitation 0.1 30 < th dose independent rect. 11 16
248 62.72 precipitation 0.1 30 < th dose dependent rect. 11 16
252 62.73 temperature 15.0 10 > th dose independent rect. 20 20
255 62.73 atmosphere 995.0 10 > th dose dependent rect. 20 7
259 62.74 temperature 25.0 90 > th dose independent rect. 19 12
261 62.74 temperature 10.0 10 > th dose dependent rect. 20 20
263 62.75 temperature 25.0 30 > th dose independent rect. 20 5
264 62.75 temperature 10.0 1440 > th dose independent rect. 4 8
267 62.75 atmosphere 995.0 1440 > th dose independent rect. 4 8
294 62.75 temperature 10.0 1440 > th dose independent rect. 12 16
299 62.76 temperature 25.0 10 > th dose independent rect. 20 1
301 62.76 wind 9.0 90 < th dose independent rect. 19 8
303 62.76 temperature 30.0 90 < th dose independent rect. 19 8
304 62.76 humidity 50.0 90 > th dose independent rect. 19 8
307 62.76 radiation 1.0 90 < th dose independent rect. 19 8
312 62.76 precipitation 0.1 30 < th dose independent rect. 3 8
314 62.76 temperature 15.0 270 > th dose independent rect. 22 14
316 62.76 temperature 10.0 90 > th dose independent rect. 3 16
317 62.76 atmosphere 1015.0 90 < th dose independent rect. 3 16
319 62.76 humidity 50.0 30 > th dose independent rect. 12 23
320 62.76 radiation 1.0 90 < th dose dependent rect. 19 8
325 62.76 precipitation 0.1 30 < th dose dependent rect. 3 8
339 62.78 wind 5.0 30 < th dose independent rect. 11 16
340 62.78 temperature 30.0 10 < th dose independent rect. 11 16
343 62.78 wind 9.0 30 < th dose independent rect. 21 23
345 62.78 radiation 1.0 10 > th dose dependent rect. 13 23
347 62.79 radiation 1.0 30 > th dose independent rect. 11 5
349 62.79 wind 9.0 30 < th dose independent rect. 3 8
350 62.79 temperature 10.0 30 > th dose independent rect. 3 8
353 62.79 atmosphere 995.0 30 > th dose independent rect. 3 8
354 62.79 atmosphere 1015.0 30 < th dose independent rect. 3 8
362 62.80 humidity 90.0 10 < th dose independent rect. 20 1
369 62.80 radiation 40.0 90 < th dose independent rect. 3 16
370 62.80 precipitation 0.1 90 < th dose independent rect. 3 16
376 62.80 precipitation 0.1 90 < th dose dependent rect. 3 16
389 62.81 temperature 10.0 30 > th dose dependent rect. 11 16
396 62.82 temperature 20.0 10 > th dose dependent rect. 20 1
397 62.82 atmosphere 1015.0 30 < th dose dependent rect. 20 1
405 62.83 atmosphere 995.0 30 > th dose independent rect. 11 16
415 62.84 wind 3.0 720 < th dose independent rect. 24 1
422 62.84 wind 7.0 30 < th dose independent rect. 20 16
425 62.84 wind 1.0 30 > th dose dependent rect. 20 1
427 62.84 temperature 10.0 30 > th dose dependent rect. 20 1
433 62.85 atmosphere 1000.0 30 > th dose independent rect. 20 1
436 62.85 temperature 30.0 30 < th dose independent rect. 3 8
442 62.85 radiation 10.0 1440 < th dose dependent rect. 21 1
448 62.86 wind 1.0 30 > th dose independent rect. 20 1
449 62.86 wind 9.0 30 < th dose independent rect. 20 1
450 62.86 temperature 10.0 30 > th dose independent rect. 20 1
453 62.86 temperature 30.0 30 < th dose independent rect. 20 1
454 62.86 humidity 50.0 30 > th dose independent rect. 20 1
458 62.86 atmosphere 1010.0 30 < th dose independent rect. 20 1
460 62.86 radiation 1.0 30 < th dose independent rect. 20 1
465 62.86 precipitation 0.1 30 < th dose independent rect. 20 1
468 62.86 radiation 40.0 30 < th dose independent rect. 3 8
470 62.86 humidity 60.0 270 > th dose independent rect. 17 10
471 62.86 wind 9.0 90 < th dose independent rect. 3 16
476 62.86 radiation 1.0 30 < th dose dependent rect. 20 1
484 62.86 precipitation 0.1 30 < th dose dependent rect. 20 1
489 62.87 wind 5.0 30 < th dose independent rect. 20 1
494 62.87 temperature 30.0 1440 < th dose independent rect. 21 1
498 62.87 humidity 50.0 1440 > th dose independent rect. 21 1
504 62.87 atmosphere 995.0 1440 > th dose independent rect. 21 1
505 62.87 radiation 1.0 1440 < th dose independent rect. 21 1
525 62.87 wind 9.0 30 < th dose independent rect. 11 5
531 62.87 temperature 10.0 1440 > th dose independent rect. 22 23
535 62.87 wind 7.0 30 < th dose dependent rect. 20 1
542 62.87 atmosphere 1015.0 10 < th dose dependent rect. 11 5
545 62.87 radiation 40.0 1440 < th dose dependent rect. 20 9
550 62.88 humidity 80.0 30 < th dose independent rect. 11 5
558 62.88 atmosphere 995.0 30 > th dose dependent rect. 20 1
559 62.88 atmosphere 1005.0 30 > th dose dependent rect. 20 1
561 62.88 atmosphere 995.0 30 > th dose dependent rect. 3 8
569 62.89 atmosphere 995.0 90 > th dose independent rect. 3 16
572 62.89 humidity 50.0 30 > th dose dependent rect. 20 1
579 62.90 wind 7.0 30 < th dose independent rect. 12 8
580 62.90 temperature 20.0 30 > th dose independent rect. 12 8
581 62.90 temperature 10.0 1440 > th dose independent rect. 13 8
587 62.90 temperature 30.0 270 < th dose independent rect. 17 10
588 62.90 temperature 10.0 1440 > th dose independent rect. 21 16
591 62.90 atmosphere 995.0 1440 > th dose independent rect. 21 16
593 62.90 radiation 40.0 10 < th dose independent rect. 16 19
640 62.92 wind 1.0 90 > th dose independent rect. 19 8
645 62.92 temperature 25.0 720 > th dose dependent rect. 20 1
646 62.92 temperature 30.0 30 < th dose dependent rect. 20 1
677 62.93 temperature 30.0 270 < th dose dependent rect. 1 6
680 62.93 wind 9.0 90 < th dose dependent rect. 19 8
681 62.93 temperature 10.0 30 > th dose dependent rect. 12 8
687 62.94 wind 9.0 30 < th dose independent rect. 16 19
688 62.94 atmosphere 1015.0 270 < th dose independent rect. 12 20
698 62.94 atmosphere 995.0 90 > th dose dependent rect. 3 16
703 62.95 temperature 10.0 30 > th dose independent rect. 12 8
706 62.95 atmosphere 1010.0 30 < th dose independent rect. 12 8
710 62.95 atmosphere 995.0 30 > th dose independent rect. 20 16
730 62.96 wind 5.0 30 < th dose independent rect. 11 5
731 62.96 temperature 10.0 30 > th dose independent rect. 11 5
734 62.96 atmosphere 1015.0 30 < th dose independent rect. 11 5
735 62.96 precipitation 0.1 30 < th dose independent rect. 11 5
738 62.96 temperature 10.0 30 > th dose independent rect. 16 19
748 62.96 precipitation 0.1 30 < th dose dependent rect. 11 5
752 62.97 atmosphere 995.0 270 > th dose independent rect. 11 1
753 62.97 atmosphere 1015.0 270 < th dose independent rect. 11 1
754 62.97 precipitation 0.1 270 < th dose independent rect. 11 1
756 62.97 radiation 10.0 270 < th dose independent rect. 17 10
758 62.97 precipitation 0.1 30 < th dose independent rect. 20 16
759 62.97 temperature 10.0 270 > th dose independent rect. 12 23
760 62.97 precipitation 0.1 270 < th dose dependent rect. 11 1
763 62.97 precipitation 0.1 30 < th dose dependent rect. 20 16
768 62.98 temperature 15.0 1440 > th dose independent rect. 17 3
775 62.98 humidity 50.0 30 > th dose independent rect. 11 16
778 62.98 wind 9.0 270 < th dose independent rect. 12 23
781 62.98 radiation 40.0 270 > th dose dependent rect. 8 1
817 63.00 wind 1.0 270 > th dose independent rect. 11 1
819 63.00 temperature 10.0 1440 > th dose independent rect. 12 5
825 63.00 humidity 90.0 10 < th dose independent rect. 11 14
828 63.00 temperature 10.0 1440 > th dose independent rect. 17 19
837 63.00 radiation 1.0 270 < th dose dependent rect. 3 15
838 63.01 wind 9.0 1440 < th dose independent rect. 21 1
843 63.01 wind 1.0 10 > th dose independent rect. 11 5
846 63.01 atmosphere 995.0 30 > th dose independent rect. 11 5
847 63.01 radiation 1.0 270 < th dose independent rect. 3 15
855 63.01 radiation 20.0 43200 < th dose dependent rect. 20 8
867 63.02 atmosphere 1010.0 90 < th dose independent rect. 19 8
869 63.02 precipitation 0.1 30 < th dose independent rect. 12 8
873 63.02 wind 1.0 30 > th dose independent rect. 16 19
876 63.02 radiation 1.0 270 > th dose independent rect. 17 21
887 63.02 atmosphere 995.0 30 > th dose dependent rect. 12 8
888 63.02 precipitation 0.1 30 < th dose dependent rect. 12 8
894 63.03 temperature 15.0 270 > th dose independent rect. 8 4
914 63.03 humidity 50.0 30 > th dose independent rect. 20 16
919 63.03 precipitation 0.1 10 < th dose independent rect. 16 19
924 63.03 humidity 90.0 30 < th dose dependent rect. 8 4
927 63.03 precipitation 0.1 10 < th dose dependent rect. 16 19
938 63.04 wind 9.0 90 < th dose independent rect. 19 21
947 63.05 radiation 20.0 10 > th dose independent rect. 11 3
951 63.05 humidity 60.0 10 > th dose independent rect. 21 23
967 63.05 radiation 40.0 10 < th dose dependent rect. 4 16
974 63.06 radiation 30.0 90 < th dose independent rect. 15 4
977 63.06 atmosphere 995.0 30 > th dose independent rect. 12 8