Os01g0335700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os01g0335700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.37 | 0.255 | 10.1 | 0.382 | 0.302 | 1 | -0.193 | 0.11 | 0.235 | 23.3 | 19.6 | 2134 | -- | -- |
| 29.24 | 0.252 | 10.1 | 0.349 | 0.313 | 0.934 | -0.0898 | -- | 0.205 | 22.7 | 20.4 | 2505 | -- | -- |
| 29.52 | 0.253 | 10.1 | 0.385 | 0.305 | 0.997 | -- | 0.0836 | 0.236 | 23.1 | 19.63 | 2134 | -- | -- |
| 29.17 | 0.252 | 10.1 | 0.368 | 0.305 | 0.898 | -- | -- | 0.203 | 22.7 | 20.6 | 2503 | -- | -- |
| 35.28 | 0.277 | 10.1 | 0.338 | -- | 1.02 | -- | -0.0164 | 0.226 | -- | 19.5 | 2305 | -- | -- |
| 47.52 | 0.323 | 10.1 | 0.82 | 0.361 | -- | -0.178 | -- | 0.442 | 23.3 | -- | -- | -- | -- |
| 47.65 | 0.323 | 10.1 | 0.828 | 0.363 | -- | -- | -- | 0.443 | 23.1 | -- | -- | -- | -- |
| 34.62 | 0.274 | 10.1 | 0.354 | -- | 0.973 | -- | -- | 0.197 | -- | 20.6 | 2349 | -- | -- |
| 31.62 | 0.262 | 10.2 | -- | 0.303 | 1.07 | -- | -- | 0.133 | 22.5 | 20.3 | 2589 | -- | -- |
| 55.87 | 0.349 | 10.1 | 0.836 | -- | -- | -- | -- | 0.446 | -- | -- | -- | -- | -- |
| 65.72 | 0.379 | 10.1 | -- | 0.371 | -- | -- | -- | 0.351 | 23.3 | -- | -- | -- | -- |
| 36.85 | 0.283 | 10.1 | -- | -- | 1.15 | -- | -- | 0.136 | -- | 20.03 | 2485 | -- | -- |
| 74.33 | 0.402 | 10.1 | -- | -- | -- | -- | -- | 0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 2 | 28.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 4 | 28.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 13 |
| 5 | 28.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 22 | 28.65 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 25 | 28.66 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 37 | 28.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 38 | 28.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 44 | 28.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 7 |
| 61 | 28.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 106 | 28.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 13 |
| 141 | 29.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 174 | 29.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 187 | 29.13 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 202 | 29.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 213 | 29.17 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 233 | 29.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 3 |
| 244 | 29.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 389 | 29.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 500 | 29.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 683 | 29.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 783 | 30.10 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 829 | 30.16 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 849 | 30.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 866 | 30.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 888 | 30.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 918 | 30.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 947 | 30.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 978 | 30.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |