Os01g0330200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase C1A, papain family protein.
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Os01g0330200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase C1A, papain family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.08 | 0.379 | 2.89 | 0.318 | 0.0571 | -0.684 | -0.0639 | 3.27 | 0.153 | 3.77 | 51.28 | 3586 | -- | -- |
| 69.62 | 0.389 | 2.95 | 0.314 | 0.0515 | -0.148 | -0.0386 | -- | 0.135 | 3.13 | 65 | 1052 | -- | -- |
| 64.55 | 0.374 | 2.9 | 0.299 | 0.0523 | -0.531 | -- | 3.25 | 0.16 | 4.4 | 51 | 3224 | -- | -- |
| 69.63 | 0.389 | 2.95 | 0.316 | 0.0486 | -0.15 | -- | -- | 0.138 | 2.35 | 65 | 1012 | -- | -- |
| 64.7 | 0.375 | 2.9 | 0.288 | -- | -0.66 | -- | 3.61 | 0.166 | -- | 50.16 | 3219 | -- | -- |
| 69.97 | 0.392 | 2.94 | 0.29 | 0.0357 | -- | -0.112 | -- | 0.157 | 4.4 | -- | -- | -- | -- |
| 70.01 | 0.392 | 2.94 | 0.291 | 0.035 | -- | -- | -- | 0.158 | 3.94 | -- | -- | -- | -- |
| 69.76 | 0.389 | 2.95 | 0.315 | -- | -0.132 | -- | -- | 0.141 | -- | 65 | 1010 | -- | -- |
| 72.14 | 0.398 | 2.95 | -- | 0.0273 | -0.0984 | -- | -- | 0.12 | 4.64 | 65 | 1012 | -- | -- |
| 70.07 | 0.391 | 2.94 | 0.292 | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
| 72.24 | 0.398 | 2.95 | -- | 0.0406 | -- | -- | -- | 0.126 | 3.84 | -- | -- | -- | -- |
| 72.17 | 0.397 | 2.95 | -- | -- | -0.118 | -- | -- | 0.119 | -- | 65 | 984 | -- | -- |
| 72.33 | 0.397 | 2.95 | -- | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.01 | atmosphere | 1010.0 | 10 | > th | dose independent | rect. | 24 | 10 |
| 3 | 63.02 | atmosphere | 1010.0 | 90 | > th | dose independent | rect. | 24 | 9 |
| 7 | 63.06 | atmosphere | 1010.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 8 | 63.06 | atmosphere | 1010.0 | 10 | > th | dose independent | rect. | 9 | 1 |
| 62 | 64.86 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 63 | 64.89 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 65 | 64.92 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 5 | 2 |
| 66 | 64.95 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 5 | 5 |
| 67 | 64.97 | temperature | 20.0 | 720 | > th | dose independent | rect. | 10 | 9 |
| 68 | 65.02 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 69 | 65.10 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 11 |
| 73 | 65.15 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 74 | 65.16 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 75 | 65.16 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 76 | 65.17 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 100 | 65.23 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 13 | 22 |
| 104 | 65.25 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 117 | 65.30 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 118 | 65.30 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 130 | 65.36 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 140 | 65.40 | humidity | 80.0 | 90 | < th | dose independent | rect. | 22 | 12 |
| 141 | 65.41 | temperature | 20.0 | 270 | < th | dose independent | rect. | 5 | 2 |
| 144 | 65.42 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 145 | 65.43 | humidity | 50.0 | 4320 | < th | dose independent | sin | 23 | NA |
| 158 | 65.44 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 160 | 65.44 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 161 | 65.44 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 14 | 2 |
| 162 | 65.44 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 13 | 4 |
| 166 | 65.45 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 169 | 65.45 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 3 | 14 |
| 178 | 65.46 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 211 | 65.46 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 214 | 65.46 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 246 | 65.48 | humidity | 50.0 | 4320 | < th | dose independent | no | NA | NA |
| 247 | 65.48 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 368 | 65.48 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 369 | 65.49 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 370 | 65.49 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 376 | 65.50 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 407 | 65.51 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 417 | 65.53 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 431 | 65.53 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 16 |
| 438 | 65.53 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 20 |
| 455 | 65.54 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 14 |
| 458 | 65.54 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 23 |
| 469 | 65.55 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 476 | 65.56 | humidity | 80.0 | 90 | < th | dose independent | rect. | 4 | 6 |
| 496 | 65.58 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 21 | 8 |
| 515 | 65.59 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 10 | 13 |
| 572 | 65.62 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 13 | 8 |
| 573 | 65.62 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 13 | 8 |
| 601 | 65.62 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 12 | 22 |
| 603 | 65.63 | humidity | 50.0 | 4320 | > th | dose independent | sin | 21 | NA |
| 618 | 65.63 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 10 |
| 635 | 65.63 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 636 | 65.63 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 638 | 65.63 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 11 |
| 667 | 65.64 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 703 | 65.66 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 738 | 65.66 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 742 | 65.67 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 743 | 65.67 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 809 | 65.68 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 846 | 65.68 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 4 |
| 853 | 65.68 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 857 | 65.69 | temperature | 25.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 860 | 65.69 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 875 | 65.69 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 7 | 15 |
| 888 | 65.69 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 8 | 20 |
| 919 | 65.70 | humidity | 50.0 | 4320 | > th | dose independent | no | NA | NA |
| 927 | 65.70 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 931 | 65.70 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 7 |