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Os01g0329800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : YT521-B-like protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.18 (0.0196) R2 : 0.572
β1 : 1.31 (0.0736) R2dD : 0.343 R2D : 0.196
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.52 (0.0877) R2dE : 0.361 R2E : 0.22
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0399 (0.0451) R2dN8 : 0.00118 R2N8 : 0.0213
σ : 0.357
deviance : 58.68
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C
peak time of C : --
E
wheather : temperature
threshold : 26.6
memory length : 501
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.02 0.342 8.14 1.72 0.0727 1.44 -0.832 -2.13 0.0396 2.29 28.27 703 -- --
55.82 0.348 8.19 1.25 0.286 1.61 0.384 -- -0.0453 13.1 26.43 286 -- --
52 0.336 8.14 1.58 0.413 1.51 -- -1.61 0.0336 12.4 27.19 164 -- --
55.55 0.347 8.17 1.32 0.423 1.6 -- -- -0.0285 12.3 26.67 146 -- --
54.31 0.343 8.14 1.68 -- 1.44 -- -1.98 0.0441 -- 27.5 492 -- --
91.4 0.448 8.25 0.914 0.309 -- -0.506 -- -0.38 7.28 -- -- -- --
91.84 0.449 8.25 0.906 0.311 -- -- -- -0.377 8.08 -- -- -- --
58.68 0.357 8.18 1.31 -- 1.52 -- -- -0.0399 -- 26.6 501 -- --
95.03 0.457 8.23 -- 0.43 1.07 -- -- -0.272 10.7 26.67 146 -- --
97.14 0.461 8.26 0.909 -- -- -- -- -0.374 -- -- -- -- --
113.47 0.498 8.27 -- 0.317 -- -- -- -0.478 7.87 -- -- -- --
99.29 0.464 8.24 -- -- 1.04 -- -- -0.277 -- 26.51 417 -- --
118.92 0.509 8.28 -- -- -- -- -- -0.474 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.02 temperature 30 720 < th dose dependent rect. 9 22
11 53.55 temperature 30 720 < th dose dependent rect. 5 23
13 53.58 temperature 30 720 < th dose dependent rect. 3 23
15 53.63 temperature 30 720 < th dose dependent no NA NA
17 53.65 temperature 30 720 < th dose dependent rect. 1 23
28 53.98 temperature 30 720 < th dose dependent rect. 19 23
30 54.04 temperature 30 720 < th dose dependent rect. 17 23
31 54.07 temperature 30 720 < th dose dependent rect. 22 23
51 54.44 temperature 30 30 < th dose dependent rect. 19 23
90 54.95 temperature 15 720 > th dose dependent rect. 10 22
124 55.37 temperature 10 720 > th dose dependent rect. 20 23
125 55.37 temperature 25 30 < th dose dependent rect. 5 23
144 55.53 temperature 10 720 > th dose dependent no NA NA
145 55.53 temperature 25 30 < th dose dependent rect. 13 23
149 55.55 temperature 25 30 < th dose dependent rect. 1 23
152 55.56 temperature 15 720 > th dose dependent rect. 7 23
156 55.59 temperature 25 30 < th dose dependent rect. 21 23
161 55.60 temperature 25 30 < th dose dependent rect. 23 23
169 55.63 temperature 25 30 < th dose dependent rect. 15 23
170 55.64 temperature 15 720 > th dose dependent rect. 4 23
174 55.66 temperature 25 30 < th dose dependent rect. 17 23
181 55.70 temperature 25 30 < th dose dependent rect. 3 23
191 55.78 temperature 15 720 > th dose dependent rect. 2 23
227 55.95 temperature 15 720 > th dose dependent rect. 17 23
260 56.14 temperature 15 720 > th dose dependent rect. 15 23
293 56.28 temperature 30 1440 < th dose dependent rect. 23 17
306 56.30 temperature 30 1440 < th dose dependent rect. 1 15
554 56.71 temperature 30 1440 < th dose dependent sin 3 NA
621 56.81 temperature 30 1440 < th dose dependent rect. 11 2
783 57.05 temperature 25 1440 < th dose dependent sin 13 NA
851 57.16 temperature 10 1440 > th dose dependent rect. 21 18