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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0329000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Actin-crosslinking proteins family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.45 (0.0497) R2 : 0.671
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.68 (0.118) R2dC : 0.376 R2C : 0.393
β3 : 2.75 (0.153) R2dE : 0.26 R2E : 0.293
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.175 (0.109) R2dN8 : 0.00267 R2N8 : 0.0154
σ : 0.922
deviance : 392.01
__
_____
C
peak time of C : 11
E
wheather : temperature
threshold : 17.94
memory length : 47520
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
382.5 0.919 4.54 -1.58 2.66 1.91 -1.27 -0.0505 -0.586 11 19.5 6436 -- --
382.5 0.911 4.54 -1.58 2.66 1.92 -1.27 -- -0.583 11 19.51 6443 -- --
389.33 0.919 4.55 -1.61 2.67 1.96 -- 0.0747 -0.591 11 19.48 6465 -- --
389.31 0.919 4.54 -1.62 2.67 1.93 -- -- -0.591 11.1 19.46 6445 -- --
829.67 1.34 4.57 -1.57 -- 2.11 -- 0.0563 -0.529 -- 19.8 6610 -- --
437.87 0.981 4.66 -2.88 2.7 -- -1.25 -- -1.11 11 -- -- -- --
444.44 0.987 4.66 -2.93 2.71 -- -- -- -1.11 11.1 -- -- -- --
828.66 1.34 4.6 -1.66 -- 2.19 -- -- -0.537 -- 19.6 5196 -- --
392.01 0.922 4.45 -- 2.68 2.75 -- -- -0.175 11 17.94 47520 -- --
902.05 1.4 4.73 -2.99 -- -- -- -- -1.13 -- -- -- -- --
670.86 1.21 4.59 -- 2.74 -- -- -- -0.786 11.1 -- -- -- --
837.42 1.35 4.51 -- -- 2.78 -- -- -0.153 -- 18.27 47520 -- --
1138.39 1.57 4.65 -- -- -- -- -- -0.802 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 370.00 humidity 90 14400 > th dose dependent rect. 5 1
2 370.33 humidity 80 43200 < th dose independent rect. 17 7
3 370.45 wind 3 43200 < th dose dependent rect. 20 3
6 370.77 humidity 60 43200 > th dose dependent rect. 6 3
7 370.79 humidity 80 43200 > th dose independent rect. 17 7
8 371.03 humidity 80 43200 < th dose independent rect. 18 5
9 371.09 humidity 60 43200 > th dose dependent rect. 5 5
11 371.35 humidity 80 43200 > th dose independent rect. 18 5
12 371.37 wind 7 43200 > th dose independent rect. 18 1
14 371.47 humidity 60 43200 > th dose dependent rect. 19 1
24 371.99 humidity 70 43200 > th dose independent rect. 15 5
26 372.03 wind 7 43200 < th dose independent rect. 18 1
29 372.09 humidity 70 43200 > th dose independent rect. 16 3
31 372.11 humidity 60 43200 > th dose dependent rect. 18 4
35 372.18 humidity 70 43200 < th dose independent rect. 14 6
54 372.53 humidity 70 43200 > th dose independent rect. 13 9
60 372.63 humidity 70 43200 < th dose independent rect. 13 9
63 372.63 humidity 90 43200 < th dose dependent rect. 18 2
64 372.64 humidity 70 43200 > th dose independent rect. 2 17
68 372.71 humidity 70 43200 > th dose independent sin 20 NA
70 372.71 humidity 60 43200 < th dose independent rect. 21 13
81 372.77 humidity 60 43200 < th dose independent rect. 24 10
82 372.77 humidity 70 43200 < th dose independent rect. 12 11
103 372.89 humidity 50 43200 > th dose dependent rect. 2 19
104 372.90 humidity 90 43200 < th dose dependent rect. 17 4
132 373.04 humidity 70 43200 < th dose independent sin 20 NA
138 373.06 humidity 70 43200 < th dose independent rect. 16 2
142 373.07 humidity 50 43200 > th dose dependent rect. 5 19
157 373.12 wind 1 43200 < th dose independent rect. 23 3
165 373.13 humidity 70 43200 < th dose independent rect. 2 17
167 373.15 humidity 70 43200 > th dose independent rect. 17 1
252 373.40 humidity 80 43200 < th dose independent rect. 16 19
267 373.45 wind 1 43200 > th dose independent rect. 22 4
278 373.47 humidity 60 43200 > th dose independent rect. 24 10
284 373.50 humidity 80 43200 > th dose independent rect. 16 19
288 373.51 humidity 60 43200 > th dose independent rect. 8 1
303 373.54 humidity 50 43200 > th dose dependent sin 18 NA
334 373.64 humidity 60 43200 > th dose independent rect. 21 13
373 373.73 humidity 50 43200 > th dose dependent sin 2 NA
421 373.85 humidity 80 43200 < th dose dependent rect. 15 2
452 373.93 humidity 50 43200 > th dose dependent rect. 15 23
467 373.99 humidity 50 43200 > th dose dependent no NA NA
491 374.04 humidity 50 43200 > th dose dependent rect. 12 23
508 374.09 humidity 60 43200 < th dose dependent rect. 19 16
555 374.21 humidity 60 43200 < th dose dependent rect. 9 1
564 374.23 humidity 60 43200 < th dose independent rect. 8 1
592 374.28 humidity 90 14400 < th dose independent rect. 23 2
614 374.33 humidity 80 43200 > th dose independent rect. 6 3
675 374.48 wind 5 43200 > th dose dependent rect. 18 1
680 374.48 humidity 90 43200 < th dose dependent rect. 6 15
707 374.53 humidity 60 43200 < th dose dependent rect. 24 11
748 374.62 humidity 90 43200 < th dose dependent sin 19 NA
800 374.74 humidity 60 43200 < th dose independent rect. 6 4
830 374.80 humidity 80 43200 > th dose independent rect. 5 5
914 374.90 radiation 20 43200 < th dose independent rect. 13 1
923 374.91 humidity 70 43200 < th dose independent rect. 11 21
943 374.95 humidity 70 43200 > th dose independent rect. 10 22