Os01g0328200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0328200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 227.21 | 0.708 | 7.11 | -1.76 | 3.31 | -1.82 | 0.491 | 0.925 | -0.969 | 8.94 | 19.8 | 2646 | -- | -- |
| 228.62 | 0.704 | 7.14 | -1.89 | 3.32 | -1.99 | 0.503 | -- | -1.01 | 8.95 | 19.78 | 2665 | -- | -- |
| 228.02 | 0.703 | 7.11 | -1.74 | 3.31 | -1.83 | -- | 0.926 | -0.967 | 8.95 | 19.8 | 2660 | -- | -- |
| 229.35 | 0.705 | 7.14 | -1.89 | 3.3 | -2.02 | -- | -- | -1 | 8.94 | 19.7 | 2661 | -- | -- |
| 829.22 | 1.34 | 7.18 | -1.61 | -- | -2.29 | -- | 0.88 | -0.861 | -- | 20.1 | 2273 | -- | -- |
| 304.74 | 0.818 | 7.25 | -2.94 | 3.33 | -- | 0.494 | -- | -1.47 | 9.06 | -- | -- | -- | -- |
| 305.59 | 0.819 | 7.25 | -2.93 | 3.33 | -- | -- | -- | -1.47 | 9.07 | -- | -- | -- | -- |
| 790.36 | 1.31 | 7.21 | -2.16 | -- | -2.1 | -- | -- | -0.889 | -- | 21.25 | 789 | -- | -- |
| 261 | 0.752 | 7.09 | -- | 3.27 | -3.04 | -- | -- | -0.706 | 8.94 | 17.5 | 22822 | -- | -- |
| 945.14 | 1.44 | 7.34 | -2.93 | -- | -- | -- | -- | -1.45 | -- | -- | -- | -- | -- |
| 531.26 | 1.08 | 7.18 | -- | 3.33 | -- | -- | -- | -1.15 | 9.13 | -- | -- | -- | -- |
| 819.94 | 1.33 | 7.18 | -- | -- | -2.47 | -- | -- | -0.34 | -- | 25.3 | 646 | -- | -- |
| 1172.03 | 1.6 | 7.27 | -- | -- | -- | -- | -- | -1.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 226.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 2 | 226.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 10 |
| 3 | 226.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 11 | 227.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 12 | 227.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 13 | 227.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 80 | 229.40 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 88 | 229.58 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 106 | 229.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 119 | 230.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 150 | 230.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 158 | 231.14 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 165 | 231.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 207 | 232.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 381 | 235.13 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 443 | 235.81 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 452 | 235.92 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 453 | 235.94 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 455 | 235.97 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 468 | 236.15 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 504 | 236.37 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 16 |
| 508 | 236.40 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 523 | 236.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 11 | 16 |
| 591 | 237.30 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 601 | 237.39 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 618 | 237.53 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 624 | 237.59 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 638 | 237.75 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 681 | 238.16 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 683 | 238.17 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 690 | 238.21 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 692 | 238.22 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 695 | 238.23 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 696 | 238.24 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 708 | 238.30 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 722 | 238.42 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 734 | 238.50 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 784 | 238.83 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 816 | 239.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 17 |
| 831 | 239.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 17 |
| 838 | 239.29 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 851 | 239.38 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 868 | 239.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 898 | 239.86 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 904 | 239.90 | radiation | 10 | 1440 | < th | dose independent | sin | 17 | NA |
| 909 | 239.93 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 911 | 239.95 | wind | 5 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 913 | 239.99 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 914 | 240.00 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 935 | 240.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 967 | 240.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 969 | 240.33 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 972 | 240.34 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 15 |