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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0327500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.02) R2 : 0.00634
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.072 (0.0422) R2dN8 : 0.00819 R2N8 : 0.00634
σ : 0.377
deviance : 65.37
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.77 0.36 3.37 0.241 0.208 0.218 -0.151 1.47 -0.0869 6.72 94.86 5922 -- --
61.74 0.366 3.37 0.125 0.231 0.292 -0.224 -- -0.129 6.32 101.9 4658 -- --
58.8 0.357 3.37 0.229 0.207 0.224 -- 1.46 -0.0868 6.92 91.96 5934 -- --
61.83 0.366 3.37 0.125 0.238 0.275 -- -- -0.126 6.7 123.3 4782 -- --
61.03 0.364 3.38 0.229 -- 0.227 -- 1.46 -0.0816 -- 91 5868 -- --
62.76 0.371 3.36 0.109 0.206 -- -0.197 -- -0.0644 6.56 -- -- -- --
62.85 0.371 3.36 0.107 0.205 -- -- -- -0.0636 6.84 -- -- -- --
64.09 0.373 3.37 0.129 -- 0.264 -- -- -0.119 -- 194.2 5703 -- --
62.23 0.367 3.37 -- 0.24 0.269 -- -- -0.135 6.66 126.1 4786 -- --
65.04 0.377 3.36 0.111 -- -- -- -- -0.0596 -- -- -- -- --
63.15 0.372 3.36 -- 0.206 -- -- -- -0.0754 6.8 -- -- -- --
64.46 0.374 3.38 -- -- 0.255 -- -- -0.128 -- 89 5710 -- --
65.37 0.377 3.36 -- -- -- -- -- -0.072 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.45 atmosphere 1000.0 30 > th dose independent rect. 3 23
2 51.73 atmosphere 1005.0 90 > th dose dependent rect. 2 1
5 52.06 atmosphere 1010.0 30 < th dose dependent rect. 2 1
7 52.23 temperature 15.0 30 > th dose independent rect. 3 23
9 52.31 wind 1.0 30 < th dose independent rect. 2 1
11 52.32 wind 3.0 10 < th dose dependent rect. 2 1
17 52.33 atmosphere 1005.0 10 > th dose dependent rect. 2 1
25 52.36 temperature 10.0 30 > th dose independent rect. 2 1
27 52.36 temperature 25.0 30 < th dose independent rect. 2 1
29 52.36 humidity 50.0 30 > th dose independent rect. 2 1
32 52.36 atmosphere 995.0 30 > th dose independent rect. 2 1
33 52.36 atmosphere 1010.0 30 < th dose independent rect. 2 1
35 52.36 radiation 1.0 30 < th dose independent rect. 2 1
40 52.36 precipitation 0.1 30 < th dose independent rect. 2 1
43 52.36 temperature 10.0 30 > th dose dependent rect. 2 1
44 52.36 temperature 30.0 30 < th dose dependent rect. 2 1
46 52.36 radiation 1.0 30 < th dose dependent rect. 2 1
51 52.36 precipitation 0.1 30 < th dose dependent rect. 2 1
53 52.37 humidity 50.0 30 > th dose dependent rect. 2 1
60 52.39 humidity 90.0 30 > th dose independent rect. 2 1
69 52.44 atmosphere 995.0 30 > th dose dependent rect. 2 1
96 52.49 wind 1.0 30 > th dose independent rect. 2 1
98 52.49 atmosphere 1005.0 30 > th dose independent rect. 2 1
107 52.62 wind 9.0 30 < th dose independent rect. 3 23
115 52.93 radiation 1.0 43200 < th dose dependent rect. 3 1
118 53.21 precipitation 0.1 30 < th dose independent rect. 3 23
119 53.21 precipitation 0.1 30 < th dose dependent rect. 3 23
139 53.80 wind 9.0 1440 < th dose independent rect. 3 1
140 53.80 temperature 10.0 1440 > th dose independent rect. 3 1
143 53.80 temperature 30.0 1440 < th dose independent rect. 3 1
147 53.80 humidity 50.0 1440 > th dose independent rect. 3 1
156 53.80 atmosphere 995.0 1440 > th dose independent rect. 3 1
157 53.80 radiation 1.0 1440 < th dose independent rect. 3 1
177 53.80 temperature 10.0 1440 > th dose independent rect. 4 23
198 54.74 humidity 50.0 30 > th dose independent rect. 3 23
241 55.67 humidity 90.0 90 < th dose independent rect. 2 1
251 56.39 atmosphere 995.0 720 > th dose independent rect. 23 16
253 56.45 precipitation 0.1 720 < th dose independent rect. 15 8
254 56.45 precipitation 0.1 720 < th dose dependent rect. 15 8
255 56.52 temperature 10.0 720 > th dose independent rect. 15 8
256 56.52 temperature 10.0 720 > th dose independent rect. 23 16
264 56.67 temperature 10.0 720 > th dose independent rect. 3 8
265 56.67 atmosphere 995.0 720 > th dose independent rect. 3 8
266 56.67 temperature 10.0 720 > th dose independent rect. 11 16
271 56.84 humidity 80.0 14400 < th dose dependent rect. 3 6
272 56.85 wind 9.0 720 < th dose independent rect. 3 8
289 57.14 humidity 50.0 720 > th dose independent rect. 3 8
290 57.14 precipitation 0.1 720 < th dose independent rect. 11 16
292 57.14 precipitation 0.1 720 < th dose dependent rect. 11 16
301 57.35 humidity 90.0 90 < th dose independent rect. 1 4
302 57.35 atmosphere 1015.0 720 < th dose independent rect. 3 8
307 57.40 atmosphere 1015.0 30 < th dose independent rect. 3 23
309 57.40 temperature 10.0 30 > th dose dependent rect. 3 23
327 57.72 humidity 70.0 14400 > th dose independent rect. 8 1
330 57.74 temperature 30.0 30 < th dose independent rect. 3 23
336 57.80 wind 9.0 30 < th dose dependent rect. 3 23
339 57.85 wind 1.0 30 < th dose independent rect. 21 6
373 57.93 humidity 70.0 14400 > th dose independent rect. 4 5
376 57.94 humidity 70.0 14400 > th dose independent rect. 24 9
382 57.94 atmosphere 995.0 30 > th dose dependent rect. 3 23
383 57.95 humidity 70.0 14400 > th dose independent rect. 6 3
390 57.98 humidity 70.0 14400 < th dose independent rect. 8 1
406 58.07 radiation 40.0 720 < th dose independent rect. 15 8
408 58.07 wind 1.0 14400 < th dose dependent rect. 6 1
411 58.09 wind 1.0 30 < th dose independent rect. 13 14
427 58.22 wind 3.0 14400 > th dose independent rect. 10 1
435 58.25 wind 5.0 14400 < th dose dependent rect. 10 2
438 58.26 wind 9.0 720 < th dose independent rect. 15 8
450 58.32 humidity 70.0 14400 < th dose independent rect. 21 12
452 58.33 humidity 70.0 14400 < th dose independent rect. 6 3
495 58.38 radiation 10.0 30 < th dose dependent rect. 3 23
512 58.44 precipitation 0.1 720 < th dose independent rect. 3 8
513 58.44 wind 1.0 10 < th dose independent rect. 6 21
515 58.44 precipitation 0.1 720 < th dose dependent rect. 3 8
519 58.48 humidity 80.0 720 > th dose dependent rect. 3 1
521 58.49 wind 5.0 14400 < th dose independent rect. 11 1
524 58.50 humidity 90.0 720 > th dose independent rect. 3 1
549 58.53 wind 5.0 14400 < th dose independent rect. 10 5
560 58.57 atmosphere 995.0 720 > th dose independent rect. 15 8
569 58.59 precipitation 0.1 720 < th dose independent rect. 23 16
571 58.59 precipitation 0.1 720 < th dose dependent rect. 23 16
573 58.60 atmosphere 995.0 720 > th dose independent rect. 11 16
576 58.61 atmosphere 1000.0 720 > th dose independent rect. 14 1
582 58.65 wind 1.0 14400 < th dose independent rect. 6 1
585 58.65 radiation 10.0 30 < th dose independent rect. 3 23
588 58.66 wind 5.0 14400 > th dose independent rect. 10 5
591 58.67 wind 1.0 30 > th dose dependent rect. 2 1
603 58.72 humidity 90.0 1440 < th dose independent rect. 1 3
604 58.72 wind 9.0 720 < th dose independent rect. 23 16
617 58.79 atmosphere 1000.0 720 > th dose independent rect. 21 18
628 58.81 humidity 70.0 4320 > th dose dependent rect. 3 8
638 58.86 wind 5.0 14400 > th dose independent rect. 10 7
673 58.91 humidity 90.0 10 > th dose independent rect. 24 3
683 58.94 wind 1.0 14400 > th dose dependent rect. 11 1
695 58.97 wind 1.0 14400 < th dose independent rect. 4 3
700 58.98 wind 1.0 14400 > th dose independent rect. 5 2
710 58.99 atmosphere 1015.0 1440 < th dose independent rect. 3 1
714 59.00 wind 3.0 14400 > th dose independent rect. 19 1
716 59.00 atmosphere 1000.0 10 > th dose independent rect. 16 10
717 59.00 atmosphere 1000.0 10 > th dose independent rect. 14 12
736 59.03 humidity 90.0 4320 < th dose independent rect. 4 5
739 59.03 wind 1.0 720 > th dose independent rect. 15 8
740 59.03 radiation 40.0 10 < th dose independent rect. 3 23
756 59.05 wind 3.0 14400 > th dose dependent rect. 10 5
777 59.08 temperature 25.0 720 > th dose dependent rect. 3 5
786 59.09 humidity 80.0 4320 < th dose independent rect. 3 10
812 59.12 humidity 50.0 14400 > th dose dependent rect. 8 1
813 59.12 humidity 60.0 14400 < th dose dependent rect. 12 1
822 59.13 atmosphere 1000.0 720 > th dose independent rect. 3 22
823 59.13 humidity 50.0 4320 > th dose dependent sin 5 NA
837 59.14 humidity 90.0 1440 < th dose independent rect. 1 7
843 59.15 radiation 20.0 720 > th dose independent rect. 15 1
876 59.17 humidity 90.0 4320 < th dose dependent rect. 23 16
877 59.18 humidity 60.0 14400 < th dose independent rect. 11 1
887 59.18 humidity 90.0 4320 < th dose dependent rect. 3 12
891 59.19 wind 3.0 14400 < th dose independent rect. 19 1
899 59.19 humidity 90.0 4320 < th dose dependent rect. 3 10
933 59.21 humidity 50.0 30 > th dose dependent rect. 3 23
939 59.22 humidity 90.0 4320 < th dose dependent sin 5 NA
953 59.23 wind 3.0 30 < th dose dependent rect. 22 5
961 59.23 temperature 25.0 10 > th dose dependent rect. 16 19