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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0326000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.14 (0.0595) R2 : 0.623
β1 : -5.01 (0.218) R2dD : 0.457 R2D : 0.37
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.12 (0.148) R2dE : 0.171 R2E : 0.156
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.01 (0.127) R2dN8 : 0.0697 R2N8 : 0.00735
σ : 1.11
deviance : 570.18
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.8101
memory length : 110
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 23.9
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
559.76 1.11 6.13 -5.02 0.196 -2.22 1.04 -1.89 -0.998 6.27 0.5319 109 24 --
563.9 1.11 6.14 -5.08 0.114 -2.21 1.17 -- -0.997 2.34 0.5903 108 0.225 --
561.16 1.1 6.13 -5.02 0.336 -2.29 -- -1.4 -0.986 9.77 0.5351 109 23.4 --
568.02 1.11 6.13 -5.02 0.354 -2.34 -- -- -0.988 9.52 0.53 108 23.4 --
564.43 1.11 6.16 -5.01 -- -2.25 -- -1.5 -0.999 -- 0.53 108 23.8 --
635.17 1.18 6.22 -4.97 1.74 -- 1.24 -- -1.13 22.5 -- -- -- --
641.37 1.19 6.22 -5.02 1.74 -- -- -- -1.13 22.5 -- -- -- --
570.18 1.11 6.14 -5.01 -- -2.12 -- -- -1.01 -- 0.8101 110 23.9 --
1249.57 1.65 6.11 -- 0.356 -2.31 -- -- -0.956 10.2 0.1388 153 0.00973 --
826.9 1.34 6.17 -4.99 -- -- -- -- -1.13 -- -- -- -- --
1306.37 1.69 6.09 -- 1.71 -- -- -- -0.574 22.2 -- -- -- --
1110.28 1.55 6.11 -- -- -2.33 -- -- -0.933 -- 0.3601 40744 23.9 --
1484.65 1.8 6.05 -- -- -- -- -- -0.573 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 551.40 temperature 15.0 270 > th dose independent rect. 24 16
3 554.50 precipitation 0.1 90 < th dose independent rect. 14 15
4 554.50 precipitation 0.1 90 < th dose dependent rect. 14 15
5 554.54 temperature 15.0 1440 > th dose independent rect. 7 8
6 554.67 radiation 10.0 270 < th dose dependent rect. 5 19
7 555.07 precipitation 0.1 90 < th dose independent rect. 5 9
8 555.07 precipitation 0.1 90 < th dose dependent rect. 5 9
9 555.27 temperature 10.0 90 > th dose independent rect. 5 9
10 555.27 atmosphere 995.0 90 > th dose independent rect. 5 9
11 555.27 atmosphere 1015.0 90 < th dose independent rect. 5 9
12 555.27 temperature 10.0 90 > th dose independent rect. 14 15
13 555.69 temperature 15.0 1440 > th dose independent rect. 7 18
14 555.97 atmosphere 1015.0 90 < th dose independent rect. 14 15
15 556.94 radiation 1.0 90 > th dose independent rect. 18 20
17 557.58 radiation 40.0 90 < th dose independent rect. 14 15
21 559.74 radiation 1.0 90 > th dose independent rect. 4 10
33 560.33 wind 9.0 90 < th dose independent rect. 14 15
34 560.52 wind 9.0 90 < th dose independent rect. 5 9
38 561.35 radiation 10.0 270 < th dose dependent rect. 8 16
47 562.15 radiation 1.0 90 < th dose dependent sin 5 NA
48 562.24 humidity 50.0 90 > th dose independent rect. 5 9
49 562.50 radiation 1.0 270 < th dose independent rect. 8 16
57 563.40 radiation 1.0 90 > th dose independent sin 6 NA
63 563.97 radiation 1.0 270 < th dose independent rect. 4 20
65 564.28 radiation 1.0 90 < th dose independent sin 6 NA
67 564.44 wind 1.0 270 > th dose independent rect. 16 8
68 564.48 temperature 15.0 90 > th dose independent rect. 2 15
69 564.55 radiation 30.0 270 < th dose independent rect. 15 9
70 564.63 radiation 40.0 4320 < th dose independent rect. 16 15
75 564.81 wind 1.0 90 > th dose independent rect. 5 9
78 564.95 temperature 10.0 10 > th dose independent rect. 6 8
80 564.95 atmosphere 995.0 10 > th dose independent rect. 6 8
81 564.95 atmosphere 1015.0 10 < th dose independent rect. 6 8
82 564.95 temperature 10.0 10 > th dose independent rect. 14 16
84 565.00 atmosphere 995.0 90 > th dose independent rect. 14 15
88 565.06 atmosphere 1015.0 10 < th dose independent rect. 14 16
89 565.12 precipitation 0.1 10 < th dose independent rect. 6 8
90 565.12 precipitation 0.1 10 < th dose dependent rect. 6 8
91 565.27 radiation 40.0 270 < th dose dependent rect. 15 9
96 565.76 radiation 40.0 10 < th dose independent rect. 14 16
100 566.07 wind 9.0 270 < th dose independent rect. 16 8
110 566.57 atmosphere 1015.0 270 < th dose independent rect. 24 16
111 566.62 temperature 10.0 270 > th dose independent rect. 16 8
117 566.79 precipitation 0.1 270 < th dose independent rect. 24 16
118 566.79 precipitation 0.1 270 < th dose dependent rect. 24 16
122 567.14 radiation 1.0 270 > th dose independent sin 21 NA
148 567.55 wind 9.0 270 < th dose independent rect. 24 16
158 567.98 humidity 70.0 10 > th dose dependent rect. 24 6
166 568.23 humidity 70.0 90 > th dose dependent rect. 1 4
172 568.43 wind 9.0 10 < th dose independent rect. 14 16
177 568.56 wind 3.0 4320 < th dose independent rect. 5 4
178 568.63 wind 3.0 4320 > th dose independent rect. 5 4
198 568.96 radiation 1.0 90 < th dose independent rect. 1 6
203 569.15 humidity 80.0 90 > th dose independent rect. 3 2
207 569.33 humidity 70.0 90 > th dose dependent rect. 3 2
213 569.41 temperature 10.0 1440 > th dose independent rect. 15 16
217 569.43 wind 9.0 10 < th dose independent rect. 6 8
226 569.72 atmosphere 1015.0 90 < th dose dependent rect. 3 2
230 569.77 atmosphere 995.0 270 > th dose independent rect. 24 16
251 570.07 precipitation 0.1 270 < th dose independent rect. 16 8
252 570.07 precipitation 0.1 270 < th dose dependent rect. 16 8
275 570.46 humidity 50.0 270 > th dose dependent rect. 22 7
282 570.54 radiation 1.0 90 < th dose dependent rect. 3 2
291 570.70 radiation 1.0 90 < th dose dependent rect. 3 4
298 570.84 radiation 1.0 90 < th dose dependent rect. 1 6
304 570.94 radiation 1.0 10 > th dose independent rect. 6 8
315 571.07 radiation 1.0 90 < th dose independent rect. 3 2
317 571.07 wind 9.0 90 < th dose independent rect. 5 22
318 571.09 wind 9.0 90 < th dose independent rect. 3 2
319 571.09 temperature 10.0 90 > th dose independent rect. 3 2
321 571.09 temperature 30.0 90 < th dose independent rect. 3 2
322 571.09 humidity 50.0 90 > th dose independent rect. 3 2
325 571.09 atmosphere 995.0 90 > th dose independent rect. 3 2
326 571.09 atmosphere 1010.0 90 < th dose independent rect. 3 2
332 571.09 temperature 10.0 90 > th dose independent rect. 5 22
350 571.30 radiation 1.0 90 < th dose independent rect. 3 4
356 571.34 atmosphere 995.0 90 > th dose independent rect. 5 22
357 571.35 wind 1.0 10 > th dose independent rect. 6 8
362 571.42 humidity 80.0 270 < th dose independent rect. 10 7
366 571.45 atmosphere 995.0 270 > th dose independent rect. 16 8
368 571.51 temperature 15.0 270 > th dose independent rect. 9 9
379 571.75 radiation 1.0 270 > th dose independent rect. 9 9
395 571.83 humidity 60.0 270 > th dose dependent rect. 1 1
422 572.23 precipitation 0.1 90 < th dose independent rect. 3 2
423 572.23 precipitation 0.1 90 < th dose dependent rect. 3 2
464 572.84 humidity 50.0 270 > th dose dependent rect. 5 8
480 573.03 temperature 10.0 90 > th dose dependent rect. 5 9
498 573.24 humidity 50.0 270 > th dose independent rect. 24 16
499 573.25 radiation 20.0 10 < th dose dependent rect. 3 3
502 573.28 wind 9.0 90 < th dose dependent rect. 3 2
507 573.33 wind 1.0 270 > th dose independent rect. 1 2
511 573.39 humidity 60.0 10 > th dose dependent rect. 3 3
521 573.52 humidity 50.0 10 > th dose dependent rect. 6 21
525 573.59 humidity 80.0 270 > th dose independent rect. 1 1
533 573.65 radiation 1.0 270 > th dose independent rect. 9 20
535 573.67 atmosphere 1010.0 270 < th dose independent rect. 22 7
587 574.15 temperature 10.0 90 > th dose dependent rect. 3 2
592 574.24 wind 9.0 270 < th dose independent rect. 3 22
598 574.26 radiation 1.0 270 < th dose dependent sin 21 NA
643 574.49 atmosphere 995.0 10 > th dose independent rect. 14 16
649 574.53 humidity 80.0 10 > th dose independent rect. 3 3
653 574.56 radiation 1.0 270 < th dose independent sin 21 NA
682 574.67 humidity 80.0 10 > th dose independent rect. 24 6
690 574.79 humidity 50.0 10 > th dose independent rect. 6 8
691 574.79 atmosphere 995.0 10 > th dose independent rect. 6 21
692 574.79 radiation 1.0 270 < th dose dependent rect. 22 9
707 574.97 atmosphere 995.0 10 > th dose independent rect. 6 18
718 575.06 atmosphere 1010.0 10 < th dose independent rect. 24 6
721 575.08 wind 9.0 270 < th dose independent rect. 5 18
724 575.13 radiation 40.0 10 < th dose dependent rect. 24 6
761 575.29 temperature 10.0 270 > th dose independent rect. 3 22
781 575.38 wind 7.0 90 < th dose independent rect. 2 15
815 575.50 atmosphere 1015.0 270 < th dose dependent rect. 1 2
818 575.54 humidity 80.0 270 > th dose independent rect. 23 5
821 575.55 wind 9.0 10 < th dose independent rect. 24 6
822 575.55 temperature 10.0 10 > th dose independent rect. 24 6
823 575.55 temperature 30.0 10 < th dose independent rect. 24 6
824 575.55 humidity 50.0 10 > th dose independent rect. 24 6
827 575.55 atmosphere 995.0 10 > th dose independent rect. 24 6
828 575.55 radiation 20.0 10 < th dose independent rect. 24 6
831 575.55 temperature 10.0 10 > th dose independent rect. 6 18
844 575.67 humidity 50.0 270 > th dose independent rect. 17 7
848 575.70 temperature 15.0 270 > th dose independent rect. 10 7
852 575.72 radiation 1.0 270 < th dose independent rect. 22 9
855 575.74 wind 9.0 10 < th dose independent rect. 3 3
856 575.74 temperature 10.0 10 > th dose independent rect. 3 3
858 575.74 temperature 30.0 10 < th dose independent rect. 3 3
859 575.74 humidity 50.0 10 > th dose independent rect. 3 3
862 575.74 atmosphere 995.0 10 > th dose independent rect. 3 3
863 575.74 atmosphere 1010.0 10 < th dose independent rect. 3 3
865 575.74 radiation 20.0 10 < th dose independent rect. 3 3
869 575.74 temperature 10.0 10 > th dose independent rect. 6 21
886 575.80 wind 3.0 4320 < th dose independent rect. 1 8
892 575.84 temperature 10.0 270 > th dose independent rect. 23 6
893 575.84 temperature 30.0 270 < th dose independent rect. 23 6
894 575.84 humidity 50.0 270 > th dose independent rect. 23 6
897 575.84 atmosphere 995.0 270 > th dose independent rect. 23 6
898 575.84 radiation 20.0 270 < th dose independent rect. 23 6
903 575.84 temperature 10.0 270 > th dose independent rect. 5 18
908 575.86 radiation 40.0 270 < th dose dependent rect. 23 6
909 575.87 wind 9.0 270 < th dose independent rect. 23 6
929 575.99 wind 1.0 90 > th dose independent rect. 5 20
933 576.03 temperature 10.0 10 > th dose dependent rect. 6 8
943 576.11 precipitation 0.1 10 < th dose independent rect. 6 21
946 576.11 precipitation 0.1 10 < th dose dependent rect. 6 21
959 576.12 precipitation 0.1 10 < th dose independent rect. 6 18
966 576.12 precipitation 0.1 10 < th dose dependent rect. 6 18
994 576.18 wind 1.0 270 > th dose independent rect. 24 4