Os01g0324400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0324400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.54 | 0.452 | 3.33 | -0.642 | 0.201 | 2.27 | -0.426 | -3.61 | 0.229 | 9.89 | 26.32 | 112 | -- | -- |
| 95.65 | 0.456 | 3.29 | -0.285 | 0.227 | 1.93 | -0.554 | -- | 0.285 | 10 | 26.11 | 115 | -- | -- |
| 93.18 | 0.45 | 3.33 | -0.663 | 0.21 | 2.3 | -- | -3.92 | 0.239 | 10.4 | 26.46 | 113 | -- | -- |
| 96.6 | 0.458 | 3.28 | -0.308 | 0.252 | 1.9 | -- | -- | 0.306 | 10.7 | 26.24 | 129 | -- | -- |
| 95.13 | 0.454 | 3.34 | -0.706 | -- | 2.3 | -- | -3.99 | 0.21 | -- | 26.26 | 88 | -- | -- |
| 153.02 | 0.58 | 3.28 | -0.0332 | 0.78 | -- | 0.147 | -- | 0.355 | 14.8 | -- | -- | -- | -- |
| 153.09 | 0.579 | 3.28 | -0.0297 | 0.78 | -- | -- | -- | 0.355 | 14.8 | -- | -- | -- | -- |
| 99.41 | 0.464 | 3.3 | -0.32 | -- | 1.95 | -- | -- | 0.283 | -- | 26.02 | 94 | -- | -- |
| 98.92 | 0.463 | 3.28 | -- | 0.266 | 1.83 | -- | -- | 0.338 | 11.2 | 26.38 | 130 | -- | -- |
| 188.42 | 0.641 | 3.28 | -0.063 | -- | -- | -- | -- | 0.336 | -- | -- | -- | -- | -- |
| 153.11 | 0.579 | 3.28 | -- | 0.781 | -- | -- | -- | 0.359 | 14.8 | -- | -- | -- | -- |
| 102.09 | 0.471 | 3.29 | -- | -- | 1.91 | -- | -- | 0.322 | -- | 26.1 | 91 | -- | -- |
| 188.52 | 0.641 | 3.28 | -- | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.20 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 14 |
| 2 | 94.21 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 16 |
| 9 | 94.57 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 23 | 95.38 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 25 | 95.44 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 20 |
| 55 | 95.74 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 62 | 95.90 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 83 | 96.61 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 107 | 97.81 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 118 | 98.23 | temperature | 25 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 277 | 99.90 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 360 | 100.98 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 399 | 101.43 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 404 | 101.53 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 436 | 102.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 450 | 103.38 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 23 |
| 463 | 103.65 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 470 | 103.81 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 477 | 103.95 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 23 |
| 480 | 104.01 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 484 | 104.28 | temperature | 30 | 270 | > th | dose independent | rect. | 16 | 23 |
| 485 | 104.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 500 | 104.58 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 501 | 104.58 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 11 |
| 616 | 104.71 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 16 |
| 646 | 104.93 | temperature | 30 | 270 | < th | dose independent | sin | 23 | NA |
| 654 | 105.05 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 659 | 105.10 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 10 |
| 665 | 105.14 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 3 |
| 666 | 105.14 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 684 | 105.41 | temperature | 30 | 270 | > th | dose independent | sin | 22 | NA |
| 688 | 105.47 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 23 |
| 694 | 105.52 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 18 |
| 719 | 105.71 | temperature | 30 | 720 | > th | dose dependent | sin | 9 | NA |
| 722 | 105.75 | temperature | 30 | 720 | > th | dose independent | sin | 8 | NA |
| 730 | 105.85 | temperature | 30 | 270 | < th | dose independent | rect. | 20 | 23 |
| 764 | 106.24 | temperature | 30 | 720 | < th | dose independent | sin | 8 | NA |
| 784 | 106.47 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 851 | 106.82 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 15 |
| 862 | 106.91 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 865 | 106.97 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 4 |
| 893 | 107.28 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 14 |
| 946 | 107.53 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 6 |
| 951 | 107.57 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 12 |