Os01g0323600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine adenosyltransferase 2) (AdoMet synthetase 2).
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Os01g0323600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine adenosyltransferase 2) (AdoMet synthetase 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.27 | 0.482 | 13.6 | 0.574 | 3.44 | -0.803 | 0.18 | -0.829 | 0.374 | 5.95 | 22.25 | 1385 | -- | -- |
| 106.75 | 0.481 | 13.5 | 0.835 | 3.44 | -0.789 | 0.15 | -- | 0.441 | 5.95 | 22.31 | 1402 | -- | -- |
| 105.34 | 0.478 | 13.6 | 0.577 | 3.44 | -0.803 | -- | -0.824 | 0.373 | 5.94 | 22.26 | 1380 | -- | -- |
| 106.8 | 0.481 | 13.5 | 0.836 | 3.44 | -0.788 | -- | -- | 0.441 | 5.95 | 22.3 | 1402 | -- | -- |
| 361.41 | 0.885 | 13.6 | 0.891 | -- | -2.32 | -- | -1.41 | 0.62 | -- | 26.5 | 376 | -- | -- |
| 131.12 | 0.537 | 13.6 | 0.563 | 3.41 | -- | 0.16 | -- | 0.17 | 5.99 | -- | -- | -- | -- |
| 131.18 | 0.536 | 13.6 | 0.564 | 3.41 | -- | -- | -- | 0.17 | 5.99 | -- | -- | -- | -- |
| 355.15 | 0.878 | 13.5 | 1.31 | -- | -2.46 | -- | -- | 0.899 | -- | 26.33 | 385 | -- | -- |
| 124.07 | 0.519 | 13.6 | -- | 3.43 | -0.62 | -- | -- | 0.35 | 5.99 | 22.6 | 1385 | -- | -- |
| 734.17 | 1.27 | 13.6 | 0.664 | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
| 139.56 | 0.553 | 13.6 | -- | 3.42 | -- | -- | -- | 0.107 | 5.98 | -- | -- | -- | -- |
| 393.27 | 0.924 | 13.6 | -- | -- | -3.07 | -- | -- | 0.53 | -- | 28.29 | 501 | -- | -- |
| 745.8 | 1.27 | 13.7 | -- | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.43 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 2 | 96.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 8 | 97.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 11 |
| 11 | 97.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 32 | 99.03 | temperature | 15 | 10 | > th | dose dependent | sin | 15 | NA |
| 36 | 99.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 20 |
| 47 | 99.40 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 58 | 99.81 | temperature | 15 | 270 | > th | dose dependent | sin | 18 | NA |
| 129 | 101.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 133 | 101.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 149 | 101.52 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 11 |
| 169 | 101.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 12 |
| 170 | 101.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 319 | 103.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 13 |
| 393 | 104.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 413 | 104.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 449 | 104.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 14 |
| 479 | 104.58 | temperature | 10 | 720 | > th | dose dependent | sin | 23 | NA |
| 491 | 104.66 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 504 | 104.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 13 |
| 532 | 104.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 542 | 104.93 | temperature | 30 | 10 | < th | dose dependent | sin | 15 | NA |
| 566 | 105.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 570 | 105.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 586 | 105.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 590 | 105.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 612 | 105.20 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 20 |
| 646 | 105.30 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 660 | 105.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 14 |
| 665 | 105.35 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 666 | 105.35 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 703 | 105.41 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 725 | 105.45 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 9 |
| 761 | 105.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 778 | 105.53 | temperature | 25 | 720 | < th | dose dependent | sin | 23 | NA |
| 812 | 105.57 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 856 | 105.66 | temperature | 30 | 270 | < th | dose dependent | sin | 19 | NA |
| 867 | 105.69 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 874 | 105.70 | temperature | 30 | 270 | < th | dose dependent | sin | 21 | NA |