Os01g0323400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0323400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.75 | 0.553 | 6.23 | 2.21 | 0.6 | 1.82 | 0.719 | -5.16 | -0.108 | 9.94 | 24.9 | 4297 | -- | -- |
| 152.51 | 0.575 | 6.3 | 1.82 | 0.707 | 2.11 | 0.851 | -- | -0.0633 | 10.1 | 21.27 | 6079 | -- | -- |
| 140.73 | 0.553 | 6.23 | 2.23 | 0.597 | 1.82 | -- | -5.12 | -0.107 | 10.1 | 24.9 | 4298 | -- | -- |
| 149.8 | 0.57 | 6.33 | 1.41 | 0.62 | 1.81 | -- | -- | -0.16 | 10.8 | 21.49 | 6097 | -- | -- |
| 159.67 | 0.589 | 6.24 | 2.22 | -- | 1.93 | -- | -4.94 | -0.0582 | -- | 24.8 | 3992 | -- | -- |
| 218.56 | 0.693 | 6.49 | 0.192 | 0.684 | -- | 0.613 | -- | -0.834 | 10.5 | -- | -- | -- | -- |
| 220.07 | 0.695 | 6.49 | 0.218 | 0.68 | -- | -- | -- | -0.831 | 10.7 | -- | -- | -- | -- |
| 168.59 | 0.605 | 6.39 | 1.26 | -- | 1.77 | -- | -- | -0.247 | -- | 21.43 | 3670 | -- | -- |
| 158.65 | 0.587 | 6.46 | -- | 0.61 | 1.18 | -- | -- | -0.584 | 10.8 | 22.89 | 1988 | -- | -- |
| 248.6 | 0.737 | 6.5 | 0.204 | -- | -- | -- | -- | -0.835 | -- | -- | -- | -- | -- |
| 221.32 | 0.696 | 6.49 | -- | 0.678 | -- | -- | -- | -0.855 | 10.7 | -- | -- | -- | -- |
| 176.81 | 0.619 | 6.41 | -- | -- | 1.27 | -- | -- | -0.418 | -- | 22.9 | 2199 | -- | -- |
| 249.7 | 0.738 | 6.51 | -- | -- | -- | -- | -- | -0.858 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 3 | 128.82 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 31 | 134.28 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 35 | 134.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 12 |
| 45 | 134.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 59 | 135.33 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 78 | 135.59 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 79 | 135.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 86 | 135.76 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 104 | 136.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 6 |
| 117 | 136.18 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 118 | 136.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 129 | 136.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 139 | 136.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 145 | 136.48 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 147 | 136.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 158 | 136.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 161 | 136.60 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 208 | 137.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 210 | 137.03 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 215 | 137.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 218 | 137.08 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 236 | 137.17 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 238 | 137.18 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 258 | 137.31 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 284 | 137.44 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 19 |
| 296 | 137.53 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 310 | 137.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 19 |
| 311 | 137.67 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 317 | 137.69 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 319 | 137.69 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 325 | 137.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 331 | 137.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 344 | 137.83 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 362 | 137.92 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 18 |
| 367 | 137.94 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 16 |
| 386 | 138.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 433 | 138.14 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 16 |
| 436 | 138.15 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 447 | 138.17 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 22 |
| 456 | 138.20 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 465 | 138.22 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 487 | 138.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 534 | 138.49 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 569 | 138.67 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 571 | 138.68 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 18 |
| 572 | 138.68 | humidity | 90 | 43200 | > th | dose dependent | sin | 1 | NA |
| 574 | 138.69 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 596 | 138.75 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 16 |
| 651 | 138.87 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 21 |
| 670 | 138.89 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 22 |
| 703 | 138.99 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 704 | 138.99 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 727 | 139.04 | humidity | 90 | 43200 | > th | dose independent | sin | 2 | NA |
| 739 | 139.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 18 |
| 767 | 139.14 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 797 | 139.19 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 802 | 139.19 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 828 | 139.23 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 841 | 139.28 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 18 |
| 870 | 139.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 875 | 139.36 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 878 | 139.36 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 881 | 139.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 914 | 139.42 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 15 |
| 921 | 139.43 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 924 | 139.43 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 947 | 139.51 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 970 | 139.54 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 22 |
| 981 | 139.58 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 988 | 139.60 | temperature | 25 | 4320 | < th | dose independent | sin | 18 | NA |