Os01g0323100 - FiT-DB

FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0323100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pto kinase interactor 1.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.36	(0.0321)	R²	:	0.219
β₁	:	-0.0718	(0.125)	R²_dD	:	0.000684	R²_D	:	-0.00712
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	-0.249	(0.327)	R²_dE	:	0.00236	R²_E	:	-0.0305
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-23.8	(3.04)	R²_dD*E	:	0.26	R²_D*E	:	0.197
γ₁	:	-0.184	(0.0696)	R²_dN8	:	0.0171	R²_N8	:	-0.00202
σ	:	0.595
deviance	:	161.35
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	10.17
memory length	:	30
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	2.29
open length of G	:	0.988

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
155.78	0.586	3.36	-0.0636	0.331	-0.125	-0.162	-23.9	-0.185	17.7	5.576	33	2.02	0.987
177.59	0.625	3.4	0.318	0.329	1.78	0.0212	--	-0.19	17.5	5.576	33	2.02	0.987
155.83	0.586	3.36	-0.0614	0.33	-0.121	--	-23.8	-0.186	17.5	9.799	30	2.06	1.01
177.59	0.625	3.4	0.318	0.329	1.78	--	--	-0.19	17.5	6.657	31	2.1	1.03
161.35	0.595	3.36	-0.0718	--	-0.249	--	-23.8	-0.184	--	10.17	30	2.29	0.988
200.12	0.663	3.37	0.309	0.238	--	-0.242	--	-0.0559	19.2	--	--	--	--
200.19	0.663	3.37	0.316	0.243	--	--	--	-0.0556	18.6	--	--	--	--
183.1	0.633	3.39	0.307	--	1.65	--	--	-0.188	--	6.657	31	2.1	1.03
180.25	0.629	3.41	--	0.324	1.78	--	--	-0.225	17.6	8.353	30	2.22	1
203.26	0.666	3.36	0.31	--	--	--	--	-0.0604	--	--	--	--	--
202.82	0.666	3.37	--	0.239	--	--	--	-0.0907	18.7	--	--	--	--
185.59	0.637	3.4	--	--	1.65	--	--	-0.222	--	6.657	31	2.1	1.03
205.8	0.67	3.37	--	--	--	--	--	-0.0948	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	153.83	radiation	1.0	14400	< th	dose dependent	rect.	3	1
2	156.26	temperature	20.0	30	> th	dose dependent	rect.	2	1
3	156.40	wind	1.0	30	< th	dose independent	rect.	2	1
4	156.43	temperature	20.0	30	> th	dose independent	rect.	2	1
5	156.47	humidity	80.0	30	> th	dose independent	rect.	2	1
7	156.50	wind	3.0	30	< th	dose dependent	rect.	2	1
10	156.70	atmosphere	1005.0	30	> th	dose dependent	rect.	2	1
11	156.72	humidity	80.0	30	> th	dose dependent	rect.	2	1
20	157.01	temperature	25.0	30	< th	dose independent	rect.	2	1
21	157.02	atmosphere	1005.0	30	> th	dose independent	rect.	2	1
22	157.03	wind	5.0	30	< th	dose independent	rect.	2	1
26	157.16	temperature	10.0	30	> th	dose independent	rect.	2	1
29	157.16	humidity	50.0	30	> th	dose independent	rect.	2	1
32	157.16	atmosphere	995.0	30	> th	dose independent	rect.	2	1
33	157.16	atmosphere	1010.0	30	< th	dose independent	rect.	2	1
35	157.16	radiation	1.0	30	< th	dose independent	rect.	2	1
40	157.16	precipitation	0.1	30	< th	dose independent	rect.	2	1
41	157.16	temperature	10.0	30	> th	dose independent	rect.	3	23
42	157.16	radiation	1.0	30	< th	dose dependent	rect.	2	1
47	157.16	precipitation	0.1	30	< th	dose dependent	rect.	2	1
49	157.86	atmosphere	1015.0	30	< th	dose dependent	rect.	2	1
52	159.13	temperature	30.0	30	< th	dose dependent	rect.	2	1
64	161.05	wind	1.0	30	> th	dose independent	rect.	2	1
87	161.98	wind	9.0	1440	< th	dose independent	rect.	3	1
88	161.98	temperature	10.0	1440	> th	dose independent	rect.	3	1
91	161.98	temperature	30.0	1440	< th	dose independent	rect.	3	1
95	161.98	humidity	50.0	1440	> th	dose independent	rect.	3	1
104	161.98	atmosphere	995.0	1440	> th	dose independent	rect.	3	1
105	161.98	radiation	1.0	1440	< th	dose independent	rect.	3	1
125	161.98	temperature	10.0	1440	> th	dose independent	rect.	4	23
136	162.65	atmosphere	995.0	30	> th	dose independent	rect.	3	23
163	163.30	temperature	25.0	90	> th	dose dependent	rect.	1	3
167	164.83	wind	9.0	30	< th	dose independent	rect.	3	23
175	167.58	precipitation	0.1	30	< th	dose independent	rect.	3	23
176	167.58	precipitation	0.1	30	< th	dose dependent	rect.	3	23
183	170.34	atmosphere	1005.0	270	> th	dose dependent	rect.	24	3
192	172.96	radiation	10.0	14400	< th	dose dependent	rect.	19	8
196	173.95	atmosphere	1005.0	90	> th	dose dependent	rect.	1	5
199	174.11	radiation	20.0	1440	> th	dose independent	rect.	6	1
220	174.24	wind	7.0	4320	< th	dose independent	rect.	18	3
228	174.78	wind	7.0	4320	> th	dose independent	rect.	19	1
230	174.89	wind	7.0	4320	< th	dose independent	rect.	19	1
231	175.03	radiation	1.0	43200	< th	dose dependent	rect.	22	5
236	175.35	wind	7.0	4320	> th	dose independent	rect.	18	3
242	175.79	wind	5.0	4320	> th	dose dependent	rect.	18	3
249	175.93	wind	7.0	4320	> th	dose dependent	rect.	19	1
262	176.38	atmosphere	1005.0	10	> th	dose dependent	rect.	2	4
269	176.74	humidity	50.0	30	> th	dose independent	rect.	3	23
290	177.30	wind	5.0	4320	> th	dose independent	rect.	21	1
295	177.37	wind	5.0	4320	< th	dose independent	rect.	21	1
331	178.43	humidity	90.0	1440	< th	dose dependent	rect.	22	9
407	179.26	humidity	90.0	1440	< th	dose dependent	rect.	22	6
416	179.32	wind	5.0	14400	< th	dose independent	rect.	15	9
427	179.39	wind	5.0	14400	> th	dose independent	rect.	15	9
434	179.43	wind	5.0	14400	< th	dose independent	rect.	14	18
464	179.71	humidity	90.0	1440	< th	dose dependent	rect.	3	1
465	179.73	humidity	80.0	1440	> th	dose independent	rect.	6	1
473	179.84	wind	5.0	14400	< th	dose independent	sin	15	NA
477	179.85	wind	3.0	14400	> th	dose dependent	rect.	15	10
479	179.86	humidity	90.0	1440	< th	dose dependent	rect.	2	5
489	179.91	wind	5.0	14400	> th	dose independent	rect.	14	18
528	180.11	humidity	90.0	1440	< th	dose dependent	rect.	5	2
536	180.15	temperature	30.0	90	< th	dose dependent	rect.	13	4
537	180.16	wind	5.0	14400	> th	dose independent	sin	15	NA
552	180.23	wind	3.0	14400	> th	dose dependent	rect.	14	15
564	180.31	atmosphere	995.0	14400	> th	dose independent	rect.	8	6
574	180.38	wind	3.0	14400	> th	dose dependent	sin	15	NA
683	180.94	humidity	80.0	43200	> th	dose independent	rect.	4	7
700	181.06	humidity	90.0	1440	< th	dose dependent	rect.	23	2
711	181.16	temperature	30.0	10	< th	dose dependent	rect.	14	2
728	181.29	atmosphere	995.0	14400	> th	dose independent	rect.	18	3
735	181.33	wind	1.0	30	< th	dose independent	rect.	24	3
738	181.37	temperature	10.0	30	> th	dose dependent	rect.	3	23
749	181.45	atmosphere	1010.0	14400	< th	dose dependent	rect.	8	1
752	181.47	atmosphere	995.0	14400	> th	dose independent	rect.	18	1
753	181.47	wind	1.0	30	> th	dose independent	rect.	3	23
766	181.52	humidity	90.0	1440	< th	dose independent	rect.	2	1
768	181.52	atmosphere	995.0	14400	> th	dose independent	rect.	16	3
769	181.52	atmosphere	995.0	14400	> th	dose independent	rect.	16	5
783	181.57	atmosphere	995.0	14400	> th	dose independent	rect.	16	1
785	181.57	humidity	80.0	43200	< th	dose independent	rect.	5	6
804	181.63	atmosphere	995.0	14400	< th	dose independent	rect.	18	1
807	181.63	atmosphere	995.0	14400	< th	dose dependent	rect.	18	1
814	181.64	humidity	80.0	720	> th	dose independent	rect.	21	7
819	181.65	humidity	80.0	43200	> th	dose independent	rect.	6	4
839	181.69	humidity	80.0	43200	< th	dose independent	rect.	7	3
865	181.76	humidity	50.0	43200	> th	dose dependent	rect.	7	1
868	181.77	humidity	80.0	43200	> th	dose independent	sin	5	NA
889	181.79	atmosphere	1005.0	14400	< th	dose independent	rect.	8	1
893	181.80	humidity	70.0	43200	> th	dose independent	rect.	11	1
915	181.84	atmosphere	1005.0	14400	> th	dose independent	rect.	8	1
928	181.86	atmosphere	1000.0	14400	< th	dose dependent	rect.	8	1
938	181.90	humidity	80.0	43200	< th	dose independent	rect.	3	9
950	181.92	humidity	90.0	43200	< th	dose dependent	rect.	5	5
955	181.94	humidity	80.0	720	> th	dose independent	rect.	19	9
958	181.95	atmosphere	1005.0	14400	> th	dose independent	rect.	8	4
963	181.96	humidity	80.0	43200	< th	dose independent	sin	5	NA