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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0323000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ser Thr specific protein kinase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.18 (0.0564) R2 : 0.431
β1 : -3.71 (0.22) R2dD : 0.427 R2D : 0.276
β2 : 1.14 (0.19) R2dC : 0.0735 R2C : -0.0803
β3 : -2.79 (0.35) R2dE : 0.148 R2E : -0.0328
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.73 (1.09) R2dD*E : 0.04 R2D*E : -0.0921
γ1 : -0.95 (0.126) R2dN8 : 0.103 R2N8 : -0.0452
σ : 1.05
deviance : 508.92
__
_____
C
peak time of C : 6.16
E
wheather : radiation
threshold : 9.792
memory length : 1231
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 12.6
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
511.75 1.06 4.2 -3.76 0.83 -2.5 0.0421 5.52 -0.961 5.74 10 1266 13.5 --
532.98 1.08 4.16 -3.35 1.06 -2.51 1.52 -- -0.797 6.18 9.029 1227 12.3 --
508.92 1.05 4.18 -3.71 1.14 -2.79 -- 5.73 -0.95 6.16 9.792 1231 12.6 --
539 1.08 4.17 -3.31 1.16 -2.58 -- -- -0.823 6.53 10.17 1227 11.9 --
531.89 1.07 4.22 -3.8 -- -1.86 -- 4.46 -0.956 -- 11.08 1351 13.6 --
590.2 1.14 4.14 -3.33 0.202 -- 1.54 -- -0.583 5.16 -- -- -- --
595.48 1.14 4.14 -3.34 0.233 -- -- -- -0.591 3.35 -- -- -- --
551.02 1.09 4.21 -3.3 -- -1.41 -- -- -0.861 -- 14.96 1433 9.01 --
825.31 1.34 4.17 -- 1.32 -2.85 -- -- -0.486 7.45 10 1244 10.9 --
598.53 1.14 4.14 -3.33 -- -- -- -- -0.585 -- -- -- -- --
888.96 1.39 4.06 -- 0.167 -- -- -- -0.219 3.38 -- -- -- --
817.67 1.33 4.21 -- -- -1.95 -- -- -0.589 -- 10 1433 9.31 --
890.53 1.39 4.06 -- -- -- -- -- -0.216 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 510.48 wind 3 4320 > th dose independent rect. 8 1
2 510.64 wind 3 4320 > th dose independent rect. 5 4
3 512.06 wind 3 4320 < th dose independent rect. 5 4
4 512.52 wind 3 4320 < th dose independent rect. 8 1
20 520.75 wind 5 4320 < th dose dependent rect. 6 1
25 521.98 wind 9 4320 < th dose dependent rect. 6 1
31 522.79 wind 1 4320 > th dose dependent rect. 6 1
42 524.60 radiation 10 1440 > th dose independent rect. 11 20
43 524.64 wind 5 4320 < th dose dependent rect. 6 3
46 525.61 radiation 10 1440 > th dose independent rect. 11 7
60 525.86 radiation 10 1440 < th dose independent rect. 15 1
65 526.26 radiation 10 1440 > th dose independent sin 15 NA
70 527.07 radiation 10 1440 < th dose dependent rect. 11 7
73 527.17 wind 1 14400 < th dose independent rect. 1 2
75 527.32 wind 1 14400 > th dose independent rect. 1 1
77 527.55 radiation 10 1440 < th dose dependent rect. 11 16
78 527.57 radiation 10 1440 < th dose dependent rect. 11 14
88 527.83 radiation 10 1440 < th dose dependent rect. 11 19
90 527.88 wind 1 4320 > th dose dependent rect. 6 3
95 528.31 radiation 10 1440 > th dose independent rect. 15 3
117 528.82 radiation 10 1440 < th dose dependent sin 18 NA
149 529.66 wind 5 4320 < th dose dependent rect. 8 1
151 529.71 humidity 70 1440 < th dose dependent rect. 16 1
202 530.38 radiation 20 1440 < th dose dependent rect. 15 2
207 530.58 humidity 80 1440 < th dose dependent rect. 15 4
210 530.68 radiation 1 1440 > th dose dependent rect. 16 1
235 531.25 radiation 20 1440 < th dose dependent rect. 15 12
236 531.27 radiation 20 1440 < th dose dependent rect. 15 10
239 531.38 radiation 20 1440 < th dose dependent rect. 15 5
255 531.41 radiation 40 1440 < th dose dependent rect. 16 1
264 531.64 humidity 80 1440 < th dose dependent rect. 15 6
322 532.56 humidity 80 1440 < th dose dependent rect. 15 18
340 532.89 atmosphere 995 43200 < th dose dependent rect. 14 18
350 533.05 radiation 1 1440 > th dose dependent rect. 15 3
352 533.08 atmosphere 995 43200 > th dose independent rect. 17 17
353 533.09 temperature 30 720 > th dose dependent rect. 18 1
369 533.14 atmosphere 995 43200 < th dose independent rect. 17 16
412 533.45 radiation 10 1440 > th dose independent rect. 8 10
461 533.67 atmosphere 995 43200 < th dose dependent sin 15 NA
492 533.82 atmosphere 995 43200 < th dose dependent rect. 14 13
543 534.02 wind 1 4320 > th dose dependent rect. 8 1
549 534.06 radiation 10 1440 > th dose independent rect. 15 23
551 534.08 atmosphere 995 43200 < th dose independent sin 11 NA
560 534.16 atmosphere 995 43200 > th dose independent sin 11 NA
593 534.51 radiation 10 1440 > th dose independent rect. 11 1
606 534.73 humidity 60 1440 > th dose independent rect. 15 2
624 534.92 humidity 80 1440 < th dose dependent sin 15 NA
704 535.74 wind 1 14400 < th dose dependent rect. 1 3
714 535.86 humidity 70 1440 < th dose independent rect. 17 15
734 536.03 radiation 10 1440 > th dose independent no NA NA
735 536.03 radiation 10 1440 > th dose independent rect. 6 12
864 536.18 humidity 50 1440 < th dose independent rect. 16 1
876 536.36 humidity 60 1440 < th dose independent rect. 15 3
878 536.36 humidity 50 1440 < th dose dependent rect. 16 1
899 536.60 humidity 70 1440 < th dose independent rect. 15 17
910 536.69 radiation 10 1440 < th dose independent rect. 15 12
916 536.72 radiation 10 1440 < th dose independent rect. 15 10
938 536.91 humidity 70 1440 < th dose independent sin 13 NA
939 536.91 wind 1 90 < th dose independent rect. 4 1
941 536.91 atmosphere 995 43200 < th dose dependent rect. 17 7