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Os01g0322700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.22 (0.0984) R2 : 0.506
β1 : 2.28 (0.366) R2dD : 0.0642 R2D : -0.253
β2 : -- (--) R2dC : -- R2C : --
β3 : -5.23 (0.546) R2dE : 0.215 R2E : -0.679
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -30.7 (1.55) R2dD*E : 0.849 R2D*E : 0.217
γ1 : -1.73 (0.184) R2dN8 : 0.142 R2N8 : -0.138
σ : 1.54
deviance : 1089.27
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 39.86
memory length : 4350
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.9
open length of G : 18.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1101.64 1.56 8.26 2.3 0.378 -4.87 2.25 -29.1 -1.78 13 39.88 4331 13.9 18.7
1829.52 1.99 7.8 2.21 0.596 -3.22 2.01 -- -2.19 12 20.02 12876 12.3 19.8
1092.46 1.54 8.24 2.27 0.0245 -4.99 -- -29.4 -1.75 12.7 39.88 4348 13.9 18.7
1562.2 1.84 7.63 2.04 0.343 -3.66 -- -- -1.18 0.15 1.566 5800 12.9 19.9
1089.27 1.54 8.22 2.28 -- -5.23 -- -30.7 -1.73 -- 39.86 4350 13.9 18.7
2029.72 2.11 7.18 1.6 0.369 -- 2.76 -- -0.658 11.9 -- -- -- --
2059.09 2.12 7.18 1.71 0.448 -- -- -- -0.639 14.4 -- -- -- --
1357.44 1.72 7.69 0.512 -- -6.41 -- -- -2.24 -- 1.43 5792 14.6 20.6
1356.64 1.72 7.7 -- 0.984 -6.18 -- -- -1.92 17.9 0.8376 5796 13.4 23.5
2070.97 2.13 7.18 1.7 -- -- -- -- -0.65 -- -- -- -- --
2136.61 2.16 7.22 -- 0.415 -- -- -- -0.83 14.4 -- -- -- --
1222.42 1.63 7.7 -- -- -6.58 -- -- -2.19 -- 0.843 16034 15.5 22.6
2146.84 2.16 7.22 -- -- -- -- -- -0.838 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1017.50 humidity 80.0 43200 > th dose dependent rect. 18 4
12 1049.19 humidity 90.0 43200 < th dose independent rect. 19 3
13 1049.38 humidity 90.0 43200 < th dose independent rect. 20 1
18 1057.64 humidity 80.0 43200 > th dose dependent rect. 4 19
29 1064.37 humidity 80.0 43200 < th dose independent rect. 12 8
35 1066.17 humidity 90.0 43200 > th dose independent rect. 20 1
37 1066.34 precipitation 0.1 43200 > th dose independent rect. 17 2
43 1067.98 precipitation 0.1 43200 < th dose independent rect. 17 2
44 1067.98 precipitation 0.1 43200 < th dose dependent rect. 17 2
52 1071.91 humidity 90.0 43200 < th dose independent rect. 4 20
62 1074.59 humidity 90.0 43200 < th dose independent rect. 4 7
65 1075.05 humidity 80.0 43200 > th dose independent rect. 12 8
81 1078.69 radiation 10.0 14400 < th dose independent rect. 17 14
104 1082.02 humidity 90.0 43200 > th dose independent rect. 5 3
120 1084.44 humidity 80.0 43200 > th dose dependent rect. 4 9
134 1085.80 radiation 1.0 43200 < th dose independent rect. 17 1
135 1085.92 humidity 80.0 43200 > th dose dependent sin 20 NA
143 1086.51 radiation 1.0 43200 > th dose independent rect. 17 1
145 1086.69 humidity 90.0 43200 > th dose dependent rect. 6 1
148 1086.83 radiation 10.0 14400 < th dose independent rect. 1 6
160 1087.42 radiation 10.0 14400 < th dose independent rect. 23 8
163 1087.52 radiation 10.0 14400 < th dose independent rect. 21 10
178 1088.66 humidity 90.0 43200 > th dose dependent rect. 6 3
184 1089.32 humidity 80.0 43200 > th dose dependent sin 1 NA
211 1091.47 precipitation 0.1 43200 > th dose dependent rect. 14 5
225 1092.76 humidity 90.0 43200 < th dose independent rect. 11 13
227 1092.95 humidity 80.0 43200 > th dose independent rect. 16 2
247 1094.62 humidity 90.0 43200 > th dose independent rect. 5 18
294 1097.95 radiation 1.0 14400 < th dose dependent rect. 17 1
339 1101.18 humidity 80.0 43200 < th dose independent rect. 16 1
343 1101.71 humidity 90.0 43200 < th dose independent sin 2 NA
351 1102.52 humidity 90.0 43200 < th dose independent sin 20 NA
374 1104.42 precipitation 0.1 43200 > th dose dependent rect. 14 8
383 1105.05 radiation 1.0 43200 < th dose independent rect. 17 16
407 1106.54 radiation 1.0 14400 < th dose dependent rect. 5 1
430 1107.33 radiation 1.0 43200 > th dose independent rect. 4 5
445 1107.80 radiation 1.0 43200 < th dose independent sin 10 NA
527 1109.79 radiation 1.0 43200 > th dose independent rect. 17 16
545 1110.74 radiation 1.0 43200 > th dose independent rect. 17 18
550 1111.11 radiation 1.0 43200 > th dose independent sin 10 NA
606 1112.66 radiation 1.0 43200 > th dose independent rect. 17 13
639 1114.02 humidity 90.0 43200 > th dose independent sin 2 NA
682 1115.09 precipitation 0.1 43200 > th dose dependent rect. 11 11
697 1115.92 radiation 10.0 43200 > th dose independent rect. 5 1
732 1116.89 radiation 10.0 14400 < th dose independent rect. 13 18
770 1118.17 precipitation 0.1 43200 > th dose independent rect. 16 6
779 1118.72 precipitation 0.1 43200 < th dose independent rect. 16 6
781 1118.72 precipitation 0.1 43200 < th dose dependent rect. 16 6
796 1119.03 humidity 90.0 43200 < th dose independent rect. 15 23
810 1119.63 radiation 1.0 14400 < th dose dependent rect. 19 11
817 1119.80 radiation 1.0 14400 < th dose dependent rect. 23 7
820 1119.89 radiation 1.0 14400 < th dose dependent rect. 21 9
832 1120.29 radiation 1.0 43200 < th dose independent rect. 17 7
907 1122.93 humidity 90.0 43200 > th dose independent sin 20 NA
914 1123.11 humidity 90.0 43200 < th dose independent no NA NA
953 1124.18 humidity 90.0 43200 < th dose independent rect. 18 23
999 1125.88 radiation 1.0 14400 < th dose independent rect. 7 13