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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0319400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF247, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0348) R2 : 0.00747
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.136 (0.0734) R2dN8 : 0.00965 R2N8 : 0.00747
σ : 0.656
deviance : 197.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
183.62 0.637 2.96 -0.244 0.0623 1.24 -0.584 -1.91 0.139 15 1.197 4 -- --
185.49 0.639 2.95 -0.201 0.024 0.925 -0.451 -- 0.139 15.1 1.197 4 -- --
184.09 0.632 2.96 -0.245 0.0524 1.3 -- -1.69 0.134 14.9 1.104 3 -- --
185.75 0.635 2.95 -0.221 0.0437 1.03 -- -- 0.139 15.1 1.143 3 -- --
184.23 0.632 2.96 -0.249 -- 1.27 -- -1.73 0.134 -- 1.1 3 -- --
195.3 0.655 2.95 -0.138 0.0954 -- 0.576 -- 0.12 2.58 -- -- -- --
196.47 0.656 2.96 -0.153 0.0995 -- -- -- 0.117 3.16 -- -- -- --
185.84 0.635 2.95 -0.222 -- 1 -- -- 0.137 -- 1.123 3 -- --
187.02 0.637 2.95 -- 0.0489 0.986 -- -- 0.163 16.7 1.146 3 -- --
197.03 0.656 2.96 -0.148 -- -- -- -- 0.119 -- -- -- -- --
197.08 0.657 2.95 -- 0.0965 -- -- -- 0.134 3.15 -- -- -- --
187.12 0.637 2.95 -- -- 0.967 -- -- 0.161 -- 1.115 3 -- --
197.61 0.656 2.95 -- -- -- -- -- 0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.04 wind 1.0 10 < th dose dependent rect. 2 1
4 174.09 wind 1.0 10 < th dose independent rect. 1 2
24 177.03 temperature 20.0 90 > th dose dependent rect. 1 2
26 177.26 atmosphere 1005.0 10 > th dose independent rect. 15 1
30 177.97 atmosphere 1010.0 10 < th dose dependent rect. 2 1
31 177.99 radiation 1.0 43200 < th dose dependent rect. 3 1
32 178.10 wind 9.0 30 < th dose independent rect. 3 23
51 178.36 wind 9.0 1440 < th dose independent rect. 3 1
52 178.36 temperature 10.0 1440 > th dose independent rect. 3 1
55 178.36 temperature 30.0 1440 < th dose independent rect. 3 1
59 178.36 humidity 50.0 1440 > th dose independent rect. 3 1
68 178.36 atmosphere 995.0 1440 > th dose independent rect. 3 1
69 178.36 radiation 1.0 1440 < th dose independent rect. 3 1
93 178.36 temperature 10.0 1440 > th dose independent rect. 4 23
116 178.89 temperature 25.0 90 > th dose independent rect. 1 1
125 179.17 wind 1.0 10 > th dose independent rect. 16 19
127 179.23 temperature 20.0 10 > th dose independent rect. 2 1
134 179.51 atmosphere 1005.0 30 > th dose dependent rect. 15 1
139 179.55 humidity 90.0 10 > th dose independent rect. 2 1
147 179.70 humidity 70.0 10 > th dose dependent rect. 2 1
153 179.74 wind 1.0 10 > th dose independent sin 15 NA
155 179.77 temperature 10.0 10 > th dose independent rect. 2 1
157 179.77 temperature 30.0 10 < th dose independent rect. 2 1
158 179.77 humidity 50.0 10 > th dose independent rect. 2 1
161 179.77 atmosphere 995.0 10 > th dose independent rect. 2 1
162 179.77 atmosphere 1010.0 10 < th dose independent rect. 2 1
164 179.77 radiation 1.0 10 < th dose independent rect. 2 1
169 179.77 precipitation 0.1 10 < th dose independent rect. 2 1
170 179.77 temperature 10.0 10 > th dose independent rect. 3 23
171 179.77 radiation 1.0 10 < th dose dependent rect. 2 1
176 179.77 precipitation 0.1 10 < th dose dependent rect. 2 1
191 179.98 atmosphere 1005.0 10 > th dose independent rect. 2 1
224 180.05 atmosphere 995.0 10 > th dose independent rect. 3 23
232 180.05 wind 1.0 30 < th dose dependent rect. 11 16
236 180.11 atmosphere 995.0 10 > th dose dependent rect. 2 1
242 180.20 wind 1.0 10 < th dose independent sin 16 NA
244 180.20 temperature 30.0 30 < th dose dependent rect. 2 1
256 180.40 wind 1.0 30 > th dose independent rect. 2 1
262 180.53 precipitation 0.1 10 < th dose independent rect. 3 23
263 180.53 precipitation 0.1 10 < th dose dependent rect. 3 23
265 180.59 wind 1.0 10 > th dose independent rect. 16 22
276 181.16 wind 1.0 10 > th dose independent rect. 16 10
282 181.26 temperature 20.0 270 > th dose dependent rect. 23 4
290 181.73 temperature 20.0 90 < th dose dependent rect. 12 4
292 181.77 temperature 20.0 10 < th dose dependent rect. 12 5
315 182.13 radiation 1.0 90 < th dose independent rect. 14 1
316 182.13 radiation 1.0 90 < th dose dependent rect. 14 1
327 182.27 wind 1.0 10 > th dose independent rect. 16 12
337 182.39 temperature 30.0 90 < th dose dependent rect. 14 1
338 182.40 humidity 70.0 90 > th dose independent rect. 14 1
347 182.42 wind 7.0 30 < th dose independent rect. 16 9
352 182.59 temperature 20.0 30 < th dose dependent rect. 14 2
357 182.64 temperature 20.0 10 < th dose independent rect. 15 1
371 182.65 precipitation 0.1 10 < th dose independent rect. 16 9
372 182.65 precipitation 0.1 10 < th dose dependent rect. 16 9
373 182.66 humidity 50.0 90 > th dose independent rect. 1 15
397 182.81 precipitation 0.1 90 < th dose independent rect. 1 15
398 182.81 precipitation 0.1 90 < th dose dependent rect. 1 15
438 182.96 temperature 25.0 270 > th dose independent rect. 23 4
439 182.96 atmosphere 995.0 90 > th dose independent rect. 1 15
527 183.13 temperature 10.0 90 > th dose independent rect. 16 9
528 183.13 radiation 40.0 90 < th dose independent rect. 16 9
529 183.13 temperature 10.0 90 > th dose independent rect. 1 15
530 183.13 atmosphere 1015.0 90 < th dose independent rect. 1 15
565 183.38 temperature 20.0 90 < th dose independent rect. 12 4
569 183.39 wind 1.0 10 > th dose independent rect. 21 14
571 183.44 temperature 10.0 1440 > th dose independent rect. 17 9
574 183.44 radiation 30.0 1440 < th dose independent rect. 17 9
580 183.44 temperature 10.0 1440 > th dose independent rect. 2 15
592 183.54 atmosphere 995.0 90 > th dose independent rect. 16 9
602 183.60 atmosphere 1015.0 1440 < th dose independent rect. 3 1
644 183.87 wind 5.0 270 < th dose dependent rect. 22 5
650 183.92 wind 3.0 270 < th dose independent rect. 22 5
658 183.97 radiation 40.0 10 < th dose dependent rect. 16 9
675 184.16 temperature 30.0 90 < th dose independent rect. 1 15
708 184.43 wind 1.0 10 > th dose independent rect. 3 23
725 184.60 humidity 50.0 30 > th dose independent rect. 16 9
736 184.69 wind 9.0 30 < th dose independent rect. 1 15
738 184.69 temperature 10.0 90 > th dose dependent rect. 3 22
748 184.79 wind 9.0 270 < th dose independent rect. 3 19
750 184.81 atmosphere 1005.0 30 > th dose independent rect. 11 5
752 184.82 wind 9.0 90 > th dose independent rect. 15 1
754 184.82 humidity 50.0 30 > th dose independent rect. 3 23
755 184.82 wind 9.0 90 > th dose dependent rect. 15 1
758 184.83 wind 9.0 10 > th dose independent rect. 15 1
766 184.83 wind 9.0 10 > th dose dependent rect. 15 1
782 184.90 atmosphere 1015.0 30 < th dose independent rect. 16 9
802 185.00 radiation 40.0 270 < th dose independent rect. 11 16
807 185.03 humidity 80.0 270 > th dose independent rect. 22 5
815 185.07 wind 1.0 10 < th dose dependent sin 16 NA
817 185.08 wind 1.0 10 > th dose independent rect. 21 23
833 185.16 temperature 10.0 270 > th dose dependent rect. 3 19
874 185.34 atmosphere 1015.0 90 < th dose independent rect. 3 22
887 185.40 wind 1.0 10 > th dose independent no NA NA
947 185.57 wind 3.0 10 < th dose dependent sin 12 NA
958 185.59 temperature 10.0 10 > th dose dependent rect. 5 20
961 185.60 radiation 40.0 270 < th dose dependent rect. 11 16