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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0318400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.79 (0.088) R2 : 0.785
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 7.11 (0.175) R2dE : 0.786 R2E : 0.784
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.111 (0.185) R2dN8 : 0.000802 R2N8 : -0.000983
σ : 1.65
deviance : 1258.36
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 29.68
memory length : 687
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.6
open length of G : 2.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1255.69 1.66 6.84 -0.84 1.01 7.93 4.24 4.18 -0.399 14.1 30.1 704 17 2.81
1270.72 1.66 6.8 -0.523 1.07 7.98 -0.344 -- -0.404 13.4 30.1 709 17 2.64
1264.58 1.66 6.76 -0.549 1.05 7.99 -- 1.27 -0.269 14.2 30.08 710 17 2.63
1269.57 1.66 6.81 -0.568 0.922 7.84 -- -- -0.389 14 30.09 708 17 2.65
1278.52 1.67 6.8 -0.451 -- 7.31 -- 0.72 -0.291 -- 30.07 700 17 2.63
2244.93 2.22 6.86 -1.3 7.52 -- -0.367 -- -0.00526 0.0602 -- -- -- --
2245.51 2.22 6.86 -1.28 7.52 -- -- -- -0.00346 0.0574 -- -- -- --
1282.91 1.67 6.8 -0.617 -- 7.2 -- -- -0.306 -- 30.1 700 17 2.6
1277.54 1.66 6.8 -- 0.975 7.89 -- -- -0.337 13.9 30.07 709 17 2.63
5809.88 3.56 6.7 -1.04 -- -- -- -- 0.104 -- -- -- -- --
2288.74 2.24 6.83 -- 7.51 -- -- -- 0.139 0.0478 -- -- -- --
1258.36 1.65 6.79 -- -- 7.11 -- -- -0.111 -- 29.68 687 17.6 2.05
5838.63 3.57 6.68 -- -- -- -- -- 0.219 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1295.79 temperature 30.0 720 < th dose independent rect. 17 3
3 1407.52 temperature 30.0 720 < th dose independent rect. 17 11
4 1431.27 humidity 50.0 720 > th dose dependent rect. 18 1
6 1441.14 humidity 70.0 720 > th dose independent rect. 18 1
8 1444.11 humidity 70.0 720 > th dose independent rect. 17 3
12 1460.62 humidity 50.0 720 > th dose dependent rect. 17 3
16 1480.38 radiation 10.0 720 < th dose dependent rect. 17 2
24 1535.55 humidity 70.0 720 > th dose independent rect. 17 11
25 1536.93 temperature 10.0 90 > th dose dependent rect. 5 13
28 1539.99 radiation 10.0 720 < th dose dependent rect. 17 10
31 1547.01 radiation 1.0 90 < th dose dependent rect. 17 23
34 1549.82 radiation 1.0 90 < th dose independent rect. 5 23
35 1550.28 radiation 1.0 90 < th dose dependent rect. 17 20
46 1562.63 radiation 1.0 90 < th dose dependent rect. 5 23
47 1564.92 radiation 10.0 720 < th dose dependent rect. 16 4
49 1567.19 radiation 1.0 90 < th dose independent rect. 18 23
52 1569.82 radiation 1.0 90 < th dose independent sin 14 NA
54 1572.53 radiation 1.0 90 > th dose independent sin 14 NA
56 1573.11 radiation 1.0 90 < th dose dependent rect. 15 22
61 1576.81 radiation 1.0 90 < th dose dependent rect. 13 23
69 1578.57 radiation 1.0 90 < th dose independent rect. 17 20
77 1580.73 radiation 1.0 90 < th dose dependent no NA NA
78 1580.73 radiation 1.0 90 < th dose dependent rect. 9 23
99 1583.65 radiation 1.0 720 < th dose independent rect. 18 1
114 1586.25 radiation 1.0 90 < th dose dependent sin 15 NA
123 1589.03 temperature 10.0 10 > th dose dependent rect. 5 14
138 1596.94 radiation 1.0 90 < th dose dependent rect. 7 23
166 1621.37 radiation 1.0 90 < th dose independent rect. 15 22
172 1625.33 radiation 1.0 90 < th dose independent rect. 13 23
189 1629.77 radiation 1.0 90 < th dose independent no NA NA
190 1629.79 radiation 1.0 90 < th dose independent rect. 9 23
196 1630.43 radiation 1.0 90 > th dose independent no NA NA
197 1630.43 radiation 1.0 90 > th dose independent rect. 4 15
271 1633.80 radiation 10.0 720 < th dose independent rect. 16 4
321 1661.14 radiation 1.0 720 > th dose independent rect. 12 19
329 1665.18 radiation 1.0 90 > th dose independent rect. 14 16
343 1670.36 radiation 1.0 720 > th dose independent rect. 18 13
347 1672.20 radiation 1.0 720 < th dose independent rect. 18 9
349 1673.19 temperature 30.0 30 < th dose independent rect. 18 11
353 1675.14 temperature 10.0 30 > th dose dependent rect. 20 23
378 1682.06 radiation 1.0 720 < th dose dependent rect. 5 14
385 1684.79 humidity 60.0 90 > th dose independent rect. 18 11
432 1693.42 radiation 1.0 720 < th dose independent rect. 24 19
446 1695.32 radiation 1.0 720 < th dose dependent rect. 24 19
447 1695.65 radiation 1.0 720 < th dose dependent rect. 23 21
455 1697.24 radiation 1.0 720 < th dose independent rect. 23 21
527 1712.40 precipitation 0.1 90 < th dose independent rect. 5 13
528 1712.40 precipitation 0.1 90 < th dose dependent rect. 5 13
561 1719.43 precipitation 0.1 270 < th dose independent rect. 20 11
562 1719.43 precipitation 0.1 270 < th dose dependent rect. 20 11
582 1723.40 temperature 15.0 90 > th dose dependent rect. 14 4
585 1723.66 radiation 1.0 90 > th dose independent rect. 11 23
603 1726.55 radiation 1.0 90 > th dose independent rect. 8 23
610 1728.04 radiation 30.0 1440 < th dose dependent rect. 18 4
612 1728.58 temperature 30.0 90 < th dose independent rect. 18 2
614 1729.00 temperature 30.0 14400 > th dose independent rect. 17 1
620 1729.38 radiation 1.0 720 < th dose dependent rect. 11 8
630 1730.70 temperature 30.0 14400 < th dose independent rect. 17 1
636 1731.84 temperature 15.0 270 > th dose dependent rect. 14 1
650 1733.62 radiation 1.0 90 > th dose independent rect. 14 5
661 1733.87 temperature 10.0 1440 > th dose independent rect. 15 4
665 1733.87 temperature 10.0 1440 > th dose independent rect. 19 20
673 1735.04 temperature 25.0 1440 > th dose dependent rect. 13 6
674 1735.27 temperature 30.0 14400 > th dose dependent rect. 17 1
682 1736.55 temperature 25.0 1440 > th dose dependent rect. 13 9
697 1737.00 temperature 25.0 1440 > th dose dependent rect. 15 3
703 1737.62 humidity 80.0 1440 < th dose dependent rect. 18 1
707 1738.12 temperature 20.0 90 > th dose independent rect. 4 14
728 1740.08 radiation 40.0 1440 < th dose dependent rect. 17 7
734 1740.81 precipitation 0.1 90 < th dose independent rect. 20 23
735 1740.81 precipitation 0.1 90 < th dose dependent rect. 20 23
743 1742.08 wind 7.0 270 < th dose independent rect. 20 11
746 1742.22 humidity 90.0 90 < th dose independent rect. 14 4
751 1742.70 radiation 40.0 1440 < th dose dependent rect. 17 13
761 1743.24 temperature 30.0 14400 < th dose independent rect. 16 14
762 1743.24 temperature 25.0 1440 > th dose dependent rect. 13 19
763 1743.26 temperature 30.0 14400 < th dose independent rect. 16 8
779 1743.31 temperature 30.0 14400 > th dose dependent rect. 15 3
797 1743.88 temperature 30.0 720 < th dose independent rect. 17 18
859 1745.88 temperature 25.0 1440 > th dose dependent sin 18 NA
880 1746.57 radiation 1.0 90 < th dose dependent rect. 21 23
963 1748.91 radiation 40.0 720 < th dose dependent rect. 15 14
990 1749.40 humidity 50.0 720 > th dose dependent rect. 17 11