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Os01g0314800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Late embryogenesis abundant protein 3 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.1 (0.0466) R2 : 0.838
β1 : -1.11 (0.171) R2dD : 0.0162 R2D : 0.0272
β2 : 1.39 (0.121) R2dC : 0.049 R2C : 0.142
β3 : -5.65 (0.136) R2dE : 0.669 R2E : 0.771
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.172 (0.0998) R2dN8 : 0.0012 R2N8 : -0.00053
σ : 0.871
deviance : 349.54
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C
peak time of C : 3.45
E
wheather : temperature
threshold : 9.86
memory length : 280
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.7
open length of G : 13

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
337.82 0.864 15.1 -1.29 1.59 -5.33 -2.03 -1.6 0.12 4.16 10.71 280 11.8 13
339.4 0.858 15 -1.09 1.39 -5.66 -1.52 -- 0.171 3.35 9.929 278 11.7 13
348.43 0.869 15.1 -1.24 1.53 -5.37 -- -0.992 0.126 3.99 10.21 276 11.8 13
349.54 0.871 15.1 -1.11 1.39 -5.65 -- -- 0.172 3.45 9.86 280 11.7 13
382.99 0.911 15.1 -0.894 -- -6.13 -- 0.508 0.134 -- 10.95 244 11.3 13.2
529.46 1.08 15 -1.71 5.42 -- 1.42 -- -0.223 7.13 -- -- -- --
534.66 1.08 15 -1.68 5.43 -- -- -- -0.227 7.1 -- -- -- --
376.52 0.904 15.1 -0.965 -- -6.32 -- -- 0.204 -- 11.66 258 11.2 13
381.47 0.91 15 -- 1.26 -5.67 -- -- 0.3 4.14 11.89 282 11.6 13
2089.2 2.14 15.1 -1.58 -- -- -- -- -0.13 -- -- -- -- --
609.01 1.15 15 -- 5.41 -- -- -- -0.0396 7.12 -- -- -- --
397.73 0.929 15.1 -- -- -6.42 -- -- 0.258 -- 11.52 292 10.9 13.1
2154.64 2.17 15.1 -- -- -- -- -- 0.0452 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 340.06 temperature 10 270 > th dose dependent rect. 12 13
10 358.55 temperature 10 30 > th dose dependent sin 16 NA
29 369.95 temperature 10 270 > th dose dependent sin 20 NA
43 374.23 temperature 15 10 > th dose dependent rect. 14 13
44 374.50 temperature 30 90 < th dose dependent rect. 11 12
60 377.56 temperature 15 720 > th dose dependent rect. 12 5
61 377.73 temperature 30 10 < th dose dependent sin 18 NA
124 385.15 temperature 10 720 > th dose dependent rect. 5 19
153 388.71 temperature 25 270 > th dose dependent rect. 12 21
155 388.75 temperature 30 10 < th dose dependent rect. 10 13
202 391.25 temperature 30 90 < th dose dependent rect. 11 10
216 392.20 temperature 10 720 > th dose dependent rect. 5 12
268 394.81 temperature 10 270 > th dose dependent rect. 20 23
299 396.35 temperature 25 90 > th dose dependent rect. 14 6
334 398.08 temperature 30 270 < th dose independent sin 17 NA
335 398.12 temperature 30 90 < th dose dependent rect. 16 7
342 398.28 temperature 25 10 > th dose dependent rect. 14 6
474 401.83 temperature 15 90 > th dose dependent rect. 23 20
528 402.93 temperature 20 10 > th dose dependent rect. 14 19
529 402.93 temperature 15 10 > th dose dependent rect. 23 21
551 403.51 temperature 30 90 < th dose dependent rect. 13 10
658 406.19 temperature 25 10 > th dose independent rect. 14 6
685 406.67 temperature 30 270 < th dose independent rect. 16 12
691 406.72 humidity 70 90 > th dose independent sin 14 NA
726 407.59 temperature 25 10 > th dose independent rect. 12 8
787 409.10 humidity 70 10 > th dose independent sin 13 NA
869 410.73 temperature 30 270 > th dose independent rect. 13 6
894 410.86 temperature 30 720 < th dose independent rect. 9 19
998 412.19 humidity 50 270 > th dose independent rect. 15 23