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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0314700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0168) R2 : 0.00513
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0544 (0.0354) R2dN8 : 0.00663 R2N8 : 0.00513
σ : 0.317
deviance : 46.11
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.3 0.306 3.06 -0.0269 0.1 0.484 -0.0982 0.404 0.102 5.44 0.1196 4340 -- --
42.43 0.303 3.06 -0.00784 0.102 0.502 -0.0837 -- 0.104 5.48 0.4621 4346 -- --
42.31 0.303 3.05 -0.0263 0.1 0.481 -- 0.405 0.102 5.87 0.2389 4341 -- --
42.44 0.303 3.06 -0.00787 0.103 0.5 -- -- 0.104 5.84 0.3136 4341 -- --
42.83 0.305 3.06 -0.024 -- 0.484 -- 0.437 0.103 -- 0.2792 4117 -- --
45.39 0.316 3.07 0.0742 0.105 -- 0.0107 -- 0.0606 6.03 -- -- -- --
45.39 0.315 3.07 0.0743 0.105 -- -- -- 0.0605 5.99 -- -- -- --
42.98 0.305 3.06 -0.00508 -- 0.503 -- -- 0.107 -- 0.3106 4340 -- --
42.44 0.303 3.06 -- 0.102 0.498 -- -- 0.105 5.84 0.3131 4340 -- --
45.96 0.317 3.07 0.0774 -- -- -- -- 0.0629 -- -- -- -- --
45.53 0.316 3.07 -- 0.106 -- -- -- 0.0523 5.95 -- -- -- --
42.98 0.305 3.06 -- -- 0.501 -- -- 0.107 -- 0.3103 4338 -- --
46.11 0.317 3.07 -- -- -- -- -- 0.0544 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.94 wind 1.0 30 < th dose independent rect. 10 1
2 41.94 temperature 10.0 1440 > th dose independent rect. 11 1
6 41.94 atmosphere 995.0 1440 > th dose independent rect. 11 1
9 41.94 precipitation 0.1 1440 < th dose independent rect. 11 1
10 41.94 temperature 10.0 1440 > th dose independent rect. 12 23
13 41.94 wind 1.0 30 < th dose dependent rect. 10 1
14 41.94 precipitation 0.1 1440 < th dose dependent rect. 11 1
15 42.05 humidity 70.0 30 < th dose independent rect. 10 1
16 42.13 precipitation 0.1 4320 < th dose independent rect. 4 13
17 42.13 temperature 25.0 30 > th dose dependent rect. 10 1
18 42.13 precipitation 0.1 4320 < th dose dependent rect. 4 13
19 42.14 precipitation 0.1 4320 > th dose independent rect. 4 13
20 42.14 precipitation 0.1 4320 > th dose independent rect. 4 18
21 42.14 precipitation 0.1 4320 < th dose independent rect. 4 18
24 42.14 precipitation 0.1 4320 < th dose dependent rect. 4 18
26 42.15 precipitation 0.1 4320 > th dose independent sin 0 NA
29 42.16 precipitation 0.1 4320 < th dose independent sin 0 NA
30 42.16 precipitation 0.1 4320 < th dose independent rect. 12 5
33 42.16 precipitation 0.1 4320 < th dose dependent sin 0 NA
34 42.16 precipitation 0.1 4320 < th dose dependent rect. 12 5
38 42.17 precipitation 0.1 4320 > th dose independent rect. 11 6
44 42.18 precipitation 0.1 4320 > th dose independent rect. 6 11
48 42.18 precipitation 0.1 4320 > th dose independent rect. 3 23
49 42.18 precipitation 0.1 4320 < th dose independent rect. 3 23
53 42.18 precipitation 0.1 4320 < th dose dependent rect. 3 23
55 42.19 precipitation 0.1 4320 > th dose independent rect. 8 9
77 42.20 precipitation 0.1 4320 < th dose independent rect. 6 11
82 42.20 precipitation 0.1 4320 < th dose dependent rect. 6 11
83 42.20 precipitation 0.1 4320 > th dose dependent rect. 4 13
91 42.21 precipitation 0.1 4320 > th dose dependent rect. 8 9
92 42.21 precipitation 0.1 4320 > th dose dependent rect. 6 11
94 42.22 precipitation 0.1 4320 < th dose independent rect. 9 8
97 42.22 precipitation 0.1 4320 > th dose independent rect. 1 21
98 42.22 humidity 70.0 30 < th dose dependent rect. 10 1
99 42.22 precipitation 0.1 4320 < th dose dependent rect. 9 8
115 42.23 precipitation 0.1 4320 > th dose dependent rect. 16 1
116 42.23 precipitation 0.1 4320 > th dose dependent rect. 10 7
129 42.24 precipitation 0.1 4320 < th dose independent rect. 9 12
140 42.24 precipitation 0.1 4320 < th dose dependent rect. 9 12
143 42.25 precipitation 0.1 4320 > th dose independent rect. 16 1
144 42.25 precipitation 0.1 4320 < th dose independent rect. 11 10
151 42.25 precipitation 0.1 4320 < th dose dependent rect. 11 10
236 42.29 precipitation 0.1 4320 < th dose independent rect. 12 22
242 42.29 precipitation 0.1 4320 > th dose dependent rect. 19 22
243 42.29 precipitation 0.1 4320 < th dose dependent rect. 12 22
247 42.30 precipitation 0.1 4320 > th dose independent no NA NA
248 42.30 precipitation 0.1 4320 < th dose independent no NA NA
249 42.30 precipitation 0.1 4320 < th dose independent rect. 16 1
259 42.30 precipitation 0.1 4320 > th dose independent rect. 8 23
260 42.30 precipitation 0.1 4320 > th dose independent rect. 11 23
261 42.30 precipitation 0.1 4320 > th dose independent rect. 15 23
262 42.30 precipitation 0.1 4320 > th dose independent rect. 21 23
265 42.30 precipitation 0.1 4320 < th dose independent rect. 9 23
267 42.30 precipitation 0.1 4320 < th dose independent rect. 15 23
268 42.30 precipitation 0.1 4320 < th dose independent rect. 21 23
270 42.30 precipitation 0.1 4320 < th dose dependent no NA NA
271 42.30 precipitation 0.1 4320 < th dose dependent rect. 16 1
277 42.30 precipitation 0.1 4320 < th dose dependent rect. 9 23
279 42.30 precipitation 0.1 4320 < th dose dependent rect. 15 23
280 42.30 precipitation 0.1 4320 < th dose dependent rect. 21 23
289 42.31 precipitation 0.1 4320 < th dose independent rect. 11 20
301 42.31 precipitation 0.1 4320 < th dose independent rect. 7 23
306 42.31 precipitation 0.1 4320 < th dose dependent rect. 11 20
310 42.31 precipitation 0.1 4320 < th dose dependent rect. 7 23
366 42.33 precipitation 0.1 4320 > th dose independent rect. 11 19
378 42.33 precipitation 0.1 4320 > th dose dependent rect. 19 3
398 42.34 precipitation 0.1 4320 < th dose independent rect. 12 14
406 42.34 precipitation 0.1 4320 < th dose independent rect. 15 19
426 42.34 precipitation 0.1 4320 < th dose dependent rect. 12 14
430 42.34 precipitation 0.1 4320 < th dose dependent rect. 15 19
444 42.35 precipitation 0.1 4320 > th dose independent rect. 11 15
448 42.35 precipitation 0.1 4320 > th dose independent rect. 9 17
491 42.36 precipitation 0.1 4320 < th dose independent rect. 9 17
512 42.36 precipitation 0.1 4320 < th dose dependent rect. 9 17
551 42.37 precipitation 0.1 4320 > th dose independent rect. 19 23
552 42.37 precipitation 0.1 4320 < th dose independent rect. 19 23
567 42.37 precipitation 0.1 4320 < th dose dependent rect. 19 23
590 42.38 precipitation 0.1 4320 > th dose dependent rect. 18 8
600 42.38 precipitation 0.1 4320 > th dose dependent rect. 3 23
636 42.40 precipitation 0.1 4320 < th dose independent rect. 15 11
650 42.40 precipitation 0.1 4320 < th dose dependent rect. 15 11
705 42.43 precipitation 0.1 4320 > th dose dependent sin 2 NA
706 42.43 precipitation 0.1 4320 > th dose dependent no NA NA
711 42.43 precipitation 0.1 4320 > th dose dependent rect. 18 20
714 42.43 precipitation 0.1 4320 > th dose dependent rect. 24 23
715 42.44 precipitation 0.1 4320 < th dose independent rect. 4 10
723 42.44 precipitation 0.1 4320 < th dose dependent rect. 4 10
730 42.44 precipitation 0.1 4320 > th dose dependent rect. 8 22
735 42.45 precipitation 0.1 4320 > th dose independent rect. 4 10
759 42.45 precipitation 0.1 4320 > th dose dependent rect. 15 23
773 42.46 precipitation 0.1 4320 > th dose dependent rect. 4 10
784 42.47 precipitation 0.1 4320 < th dose independent rect. 18 3
790 42.47 precipitation 0.1 4320 < th dose dependent rect. 18 3
805 42.48 precipitation 0.1 4320 > th dose independent rect. 18 3
829 42.48 precipitation 0.1 4320 > th dose dependent rect. 21 23
834 42.49 precipitation 0.1 4320 > th dose dependent sin 13 NA
845 42.50 radiation 20.0 30 > th dose independent rect. 10 1
892 42.52 precipitation 0.1 4320 > th dose dependent rect. 18 13
924 42.54 temperature 25.0 30 > th dose independent rect. 10 1
941 42.55 atmosphere 1005.0 30 > th dose independent rect. 10 1
942 42.55 atmosphere 1010.0 30 < th dose independent rect. 10 1
945 42.55 atmosphere 1000.0 30 > th dose dependent rect. 10 1
953 42.55 precipitation 0.1 4320 > th dose dependent rect. 21 20
957 42.56 radiation 40.0 30 < th dose independent rect. 10 1
965 42.56 precipitation 0.1 4320 > th dose dependent rect. 24 17