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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0311600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sulfotransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.93 (0.0319) R2 : 0.321
β1 : 1.44 (0.138) R2dD : 0.251 R2D : -0.201
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.24 (0.154) R2dE : 0.545 R2E : -0.0292
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.599 (0.0763) R2dN8 : 0.168 R2N8 : -0.13
σ : 0.573
deviance : 151.27
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.52
memory length : 6275
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
142.64 0.561 4.05 1.19 0.18 3.44 0.046 3.92 0.529 9.94 23.02 6156 -- --
149.61 0.57 3.93 1.44 0.182 2.24 0.0225 -- 0.593 8.79 25.4 6126 -- --
142.4 0.556 4.07 1.24 0.19 3.67 -- 4.34 0.517 9.76 22.6 6043 -- --
149.46 0.569 3.93 1.42 0.184 2.22 -- -- 0.591 9.8 25.49 6098 -- --
144.24 0.559 4.07 1.28 -- 3.86 -- 4.69 0.527 -- 22.45 6232 -- --
218.18 0.692 4.06 0.267 0.209 -- 0.16 -- 0.0285 10.6 -- -- -- --
218.27 0.692 4.06 0.273 0.209 -- -- -- 0.0286 10.4 -- -- -- --
151.27 0.573 3.93 1.44 -- 2.24 -- -- 0.599 -- 25.52 6275 -- --
171.82 0.611 4.02 -- 0.0416 1.49 -- -- 0.234 8.97 48.38 2197 -- --
220.94 0.695 4.06 0.269 -- -- -- -- 0.028 -- -- -- -- --
220.23 0.694 4.07 -- 0.208 -- -- -- -0.00175 10.3 -- -- -- --
171.92 0.611 4.02 -- -- 1.5 -- -- 0.236 -- 51.15 2196 -- --
222.86 0.697 4.07 -- -- -- -- -- -0.00193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 134.93 radiation 1.0 43200 > th dose independent rect. 18 12
3 135.43 radiation 1.0 43200 < th dose independent rect. 18 12
7 135.97 radiation 1.0 43200 > th dose independent rect. 17 2
17 135.99 radiation 1.0 43200 < th dose independent rect. 17 2
19 135.99 radiation 1.0 43200 < th dose independent rect. 17 7
65 137.91 radiation 1.0 43200 < th dose independent sin 13 NA
67 137.94 radiation 40.0 43200 < th dose dependent rect. 18 1
69 137.96 atmosphere 1015.0 43200 > th dose independent rect. 21 2
70 137.96 atmosphere 1015.0 43200 < th dose independent rect. 21 2
71 137.99 radiation 1.0 43200 > th dose independent sin 13 NA
90 138.06 radiation 40.0 43200 < th dose dependent rect. 18 6
93 138.08 humidity 80.0 43200 < th dose independent rect. 18 1
109 138.14 radiation 30.0 43200 < th dose dependent rect. 18 10
134 138.20 humidity 90.0 43200 > th dose dependent rect. 6 1
145 138.27 humidity 90.0 43200 > th dose independent rect. 6 1
165 138.49 radiation 1.0 43200 < th dose dependent rect. 17 12
184 138.67 humidity 80.0 43200 > th dose independent rect. 17 2
195 138.74 radiation 1.0 43200 > th dose independent rect. 17 19
199 138.77 radiation 1.0 43200 < th dose independent rect. 17 19
242 139.09 wind 3.0 43200 < th dose dependent rect. 22 2
256 139.23 radiation 1.0 43200 < th dose independent rect. 10 20
289 139.45 radiation 1.0 43200 > th dose independent rect. 10 20
305 139.52 radiation 1.0 43200 < th dose dependent rect. 2 4
310 139.53 radiation 1.0 43200 < th dose dependent rect. 4 2
327 139.64 radiation 1.0 43200 < th dose dependent rect. 22 8
330 139.65 precipitation 0.1 43200 > th dose independent rect. 2 6
337 139.67 precipitation 0.1 43200 < th dose independent rect. 2 7
338 139.67 precipitation 0.1 43200 < th dose dependent rect. 2 7
343 139.70 humidity 90.0 43200 < th dose independent rect. 5 1
352 139.75 humidity 90.0 43200 < th dose dependent rect. 18 1
378 139.92 temperature 30.0 4320 < th dose dependent rect. 3 3
382 139.94 temperature 10.0 4320 > th dose dependent rect. 3 3
405 139.99 temperature 25.0 4320 < th dose dependent rect. 3 1
411 140.02 temperature 25.0 4320 < th dose dependent rect. 23 8
441 140.12 radiation 1.0 43200 < th dose independent rect. 23 7
443 140.12 temperature 30.0 4320 < th dose dependent rect. 5 1
449 140.14 radiation 1.0 43200 < th dose independent rect. 2 4
452 140.14 temperature 10.0 4320 > th dose dependent rect. 3 1
459 140.15 precipitation 0.1 43200 > th dose independent rect. 23 9
464 140.15 temperature 10.0 4320 > th dose dependent rect. 5 1
486 140.20 precipitation 0.1 43200 < th dose independent rect. 23 9
489 140.20 precipitation 0.1 43200 < th dose dependent rect. 23 9
492 140.22 radiation 1.0 43200 > th dose independent rect. 4 2
541 140.34 precipitation 0.1 43200 > th dose dependent rect. 2 7
628 140.51 atmosphere 1010.0 43200 > th dose dependent rect. 16 1
634 140.53 radiation 1.0 43200 < th dose dependent sin 14 NA
658 140.57 precipitation 0.1 43200 > th dose dependent rect. 23 9
678 140.64 radiation 1.0 43200 < th dose independent rect. 11 8
680 140.64 radiation 1.0 43200 < th dose independent rect. 11 13
705 140.70 atmosphere 1015.0 43200 < th dose independent sin 12 NA
724 140.73 humidity 60.0 43200 > th dose independent rect. 8 1
776 140.83 radiation 1.0 43200 < th dose independent no NA NA
779 140.83 radiation 1.0 43200 < th dose independent rect. 4 15
837 140.88 radiation 1.0 43200 > th dose independent no NA NA
839 140.88 radiation 1.0 43200 > th dose independent rect. 4 15
916 140.97 humidity 80.0 43200 > th dose dependent rect. 18 3
922 141.00 radiation 1.0 43200 > th dose independent rect. 10 9
939 141.01 temperature 30.0 43200 < th dose dependent rect. 5 1
943 141.02 wind 1.0 43200 > th dose independent rect. 22 1