Os01g0310400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pto kinase interactor 1.
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Os01g0310400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pto kinase interactor 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.76 | 0.651 | 5.37 | 0.784 | 0.64 | -1.93 | -1.5 | 4.79 | -0.101 | 16.9 | 19.65 | 365 | -- | -- |
| 203.05 | 0.664 | 5.48 | -0.0783 | 0.536 | -1.95 | -0.189 | -- | -0.347 | 18.2 | 15.94 | 498 | -- | -- |
| 195.99 | 0.652 | 5.41 | 0.567 | 0.653 | -1.98 | -- | 3.51 | -0.145 | 17.5 | 19 | 406 | -- | -- |
| 202.96 | 0.664 | 5.48 | -0.0868 | 0.544 | -1.96 | -- | -- | -0.355 | 18.2 | 16.1 | 489 | -- | -- |
| 193.76 | 0.648 | 5.35 | 0.917 | -- | -1.55 | -- | 3.62 | -0.0988 | -- | 17.7 | 1953 | -- | -- |
| 252.3 | 0.745 | 5.54 | -0.543 | 0.0251 | -- | -0.676 | -- | -0.664 | 15 | -- | -- | -- | -- |
| 253.62 | 0.746 | 5.54 | -0.558 | 0.0613 | -- | -- | -- | -0.668 | 10.1 | -- | -- | -- | -- |
| 204.92 | 0.667 | 5.47 | -0.00319 | -- | -1.63 | -- | -- | -0.352 | -- | 15.55 | 1899 | -- | -- |
| 203.14 | 0.664 | 5.48 | -- | 0.556 | -2.01 | -- | -- | -0.34 | 18.2 | 16 | 489 | -- | -- |
| 253.85 | 0.744 | 5.54 | -0.559 | -- | -- | -- | -- | -0.668 | -- | -- | -- | -- | -- |
| 261.83 | 0.757 | 5.53 | -- | 0.0646 | -- | -- | -- | -0.606 | 10.7 | -- | -- | -- | -- |
| 204.92 | 0.667 | 5.47 | -- | -- | -1.64 | -- | -- | -0.352 | -- | 15.5 | 1911 | -- | -- |
| 262.09 | 0.756 | 5.53 | -- | -- | -- | -- | -- | -0.606 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.29 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 182.48 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 24 | 185.17 | temperature | 20.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 28 | 185.58 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 40 | 185.82 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 41 | 185.85 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 66 | 186.15 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 105 | 186.47 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 107 | 186.48 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 174 | 186.79 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 180 | 186.85 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 198 | 186.90 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 11 |
| 234 | 187.08 | temperature | 30.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 244 | 187.10 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 248 | 187.12 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 463 | 188.41 | temperature | 15.0 | 1440 | > th | dose dependent | sin | 10 | NA |
| 473 | 188.48 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 482 | 188.53 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 485 | 188.55 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 489 | 188.57 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 493 | 188.58 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 598 | 189.20 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 610 | 189.23 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 13 |
| 612 | 189.24 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 11 |
| 617 | 189.27 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 18 |
| 621 | 189.28 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 20 |
| 673 | 189.53 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 711 | 189.67 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 21 |
| 713 | 189.68 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 726 | 189.72 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 730 | 189.74 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 734 | 189.74 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 13 | 18 |
| 756 | 189.79 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 771 | 189.84 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 808 | 189.91 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 4 | NA |
| 893 | 190.23 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 895 | 190.23 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 926 | 190.30 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 941 | 190.34 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 965 | 190.42 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |