Os01g0309100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0309100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 435.94 | 0.981 | 2.85 | 1.84 | 0.127 | -0.986 | 0.108 | 14 | -0.229 | 1.71 | 31.4 | 4297 | -- | -- |
| 463.4 | 1 | 3.12 | -0.0272 | 0.175 | -0.345 | 0.282 | -- | -0.301 | 0.0888 | 11.75 | 8026 | -- | -- |
| 435.91 | 0.972 | 2.85 | 1.8 | 0.133 | -0.968 | -- | 14 | -0.23 | 2.11 | 31.48 | 4268 | -- | -- |
| 463.09 | 1 | 3.13 | -0.00491 | 0.189 | -0.411 | -- | -- | -0.311 | 1.76 | 11.38 | 8085 | -- | -- |
| 436.94 | 0.974 | 2.85 | 1.79 | -- | -0.956 | -- | 14 | -0.228 | -- | 31.5 | 4282 | -- | -- |
| 463.98 | 1.01 | 3.12 | -0.131 | 0.196 | -- | 0.198 | -- | -0.334 | 2.03 | -- | -- | -- | -- |
| 464.11 | 1.01 | 3.12 | -0.137 | 0.198 | -- | -- | -- | -0.335 | 2.35 | -- | -- | -- | -- |
| 453.96 | 0.992 | 3.16 | -0.527 | -- | 0.629 | -- | -- | -0.401 | -- | 27.61 | 12471 | -- | -- |
| 462.97 | 1 | 3.12 | -- | 0.203 | -0.436 | -- | -- | -0.305 | 2.19 | 11.4 | 8071 | -- | -- |
| 466.43 | 1.01 | 3.12 | -0.129 | -- | -- | -- | -- | -0.33 | -- | -- | -- | -- | -- |
| 464.61 | 1.01 | 3.12 | -- | 0.195 | -- | -- | -- | -0.32 | 2.34 | -- | -- | -- | -- |
| 454.01 | 0.992 | 3.17 | -- | -- | 0.542 | -- | -- | -0.539 | -- | 28.4 | 12321 | -- | -- |
| 466.87 | 1.01 | 3.12 | -- | -- | -- | -- | -- | -0.316 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 434.51 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 2 | 434.59 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 3 | 434.65 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 5 | 435.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 8 | 435.23 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 5 | 4 |
| 10 | 435.34 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 19 | 13 |
| 11 | 435.37 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 13 | 435.43 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 17 | 435.58 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 18 | 435.61 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 19 | 435.64 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 58 | 435.98 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 61 | 436.00 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 63 | 436.04 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 19 |
| 87 | 436.27 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 88 | 436.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 91 | 436.28 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 92 | 436.29 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 13 |
| 94 | 436.31 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 95 | 436.32 | temperature | 30 | 4320 | < th | dose independent | rect. | 21 | 15 |
| 104 | 436.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 17 |
| 111 | 436.41 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 135 | 436.62 | atmosphere | 1000 | 1440 | < th | dose independent | sin | 9 | NA |
| 145 | 436.77 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 172 | 437.09 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 4 | 12 |
| 174 | 437.11 | atmosphere | 1000 | 1440 | > th | dose independent | sin | 8 | NA |
| 204 | 437.21 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 1 |
| 249 | 437.31 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 272 | 437.50 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 15 | 22 |
| 274 | 437.51 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 276 | 437.53 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 323 | 437.70 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 4 | 3 |
| 326 | 437.71 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 353 | 437.79 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 24 | 10 |
| 355 | 437.80 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 396 | 437.89 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 3 | 13 |
| 423 | 437.94 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 443 | 437.96 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 616 | 438.15 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 24 | 13 |
| 635 | 438.19 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 5 |
| 637 | 438.21 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 650 | 438.29 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 660 | 438.33 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 666 | 438.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 8 |
| 669 | 438.40 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 670 | 438.40 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 677 | 438.45 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 693 | 438.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 750 | 438.75 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 22 | 20 |
| 754 | 438.80 | atmosphere | 1000 | 1440 | < th | dose dependent | sin | 7 | NA |
| 770 | 438.88 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 795 | 438.95 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 24 | 9 |
| 799 | 438.98 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 1 | 18 |
| 800 | 439.00 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 811 | 439.09 | radiation | 20 | 30 | > th | dose dependent | rect. | 16 | 16 |
| 831 | 439.13 | radiation | 30 | 10 | > th | dose independent | rect. | 7 | 1 |
| 852 | 439.14 | radiation | 20 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 885 | 439.15 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 887 | 439.16 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 889 | 439.17 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 897 | 439.19 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 7 |
| 939 | 439.26 | atmosphere | 1005 | 270 | < th | dose independent | sin | 4 | NA |
| 946 | 439.29 | wind | 1 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 950 | 439.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 4 |
| 998 | 439.51 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 1 |